CX287101
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.055e-13 Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S +L GQ +YRGKQLH +Y++ V+ + P+++R +L++ + +GR I A D T K L+ L D +IETVGIP RLT CVSSQV Sbjct: 8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPTS-----KRLTVCVSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_CYAP8 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain PCC 8801) GN=rlmN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13 Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 130 VDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 V LLG S EL + GQ +YRGKQLH +Y++ + ++ P+++R L + +GR I A D T K L+ L D +IETVGIP RLT CVSSQV Sbjct: 3 VTEETLLGKSLDELTQWVEKQGQPTYRGKQLHQWLYEKGARSLDEISVFPKTWREKL--INYPIGRSTIDYRTVAPDATRKYLLCLGDGLIIETVGIPT-----AKRLTVCVSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNR3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13 Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG+S+ +L+ A D G +RG+QLH +Y + + + LP + R Q+ +GR A DGT+KLL+ +D +ETVGIP D RLT CVSSQV Sbjct: 6 LLGLSQAQLETWAKDQGLPPFRGRQLHDWLYAKGARHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLLLATDDGLSLETVGIPTRD-----RLTVCVSSQV 108
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_NITMS (Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 163 QELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GPMRLTACVSSQV 477 +E++KL +D+G YR Q+ +Y + K+I + QLP+ R + EAG+T+G V + DG T KLL++L D +ETV + E K G R T CVS+Q+ Sbjct: 10 EEMEKLVIDMGYDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGHPRSTICVSTQI 117
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Ribosomal RNA large subunit methyltransferase N OS=Synechocystis sp. (strain PCC 6803) GN=rlmN PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12 Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LL +S EL GQ +YRGKQ+H +Y++ + + LP+ +R + + +GR I A D T K L++L D +IETVGIP RLT CVSSQV Sbjct: 8 LLSLSLPELTDWVQTTGQPAYRGKQIHQWLYQKGARSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLRLADGLIIETVGIP-----SSKRLTVCVSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_HELMI (Ribosomal RNA large subunit methyltransferase N OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rlmN PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 474 L G+ +E+ L GQ ++RGKQ+ + R V+E+ LPQ+ R L EAGW P R A DGT K L +L D LIE+V +P + R+T C+S+Q Sbjct: 35 LRGLFPEEIAALLTPWGQPTFRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRVTVCLSTQ 143
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ACIBL (Ribosomal RNA large subunit methyltransferase N OS=Acidobacteria bacterium (strain Ellin345) GN=rlmN PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12 Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 190 LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVED--------EKGPM--RLTACVSSQV 477 LGQ +YR +QL +Y+ ++ ++ F LP R +L+ +GW + + + T+ DGTV+ L++ D + +ETV +P D E GP R T CVSSQV Sbjct: 4 LGQPAYRSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRFTSTDGTVRYLLQFSDGQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQV 109
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_MOOTA (Ribosomal RNA large subunit methyltransferase N OS=Moorella thermoacetica (strain ATCC 39073) GN=rlmN PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11 Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP---IFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 L G+ QEL++LAV LG+ YRG+Q+ ++ R+ K IE LP++FR L V LP + + AADG T KLL+ L D IE V + +D G R TAC+SSQV Sbjct: 7 LRGLLPQELEELAVRLGEAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA----LVAELPPVRVLNRLVAADGLTRKLLLGLGDGNSIECVLMIYKD--GRRRNTACLSSQV 115
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_LAWIP (Ribosomal RNA large subunit methyltransferase N OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11 Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LL ++ E + L V L +++YR Q+ ++++++ +IE+ LPQ R L A + I ++DGT K L++L D LIETV IP D+ G +R+T C+SSQV Sbjct: 4 LLNITYPEFESLIVTTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLT-ALIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIRITQCLSSQV 114
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_BACFR (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides fragilis GN=rlmN PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11 Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLGM+ ELQ + DLG ++ KQ+ +Y +KV I+ L R +L + + +G + + DGTVK L ++ DN +E V IP ED R T CVSSQV Sbjct: 6 LLGMTLTELQSVTKDLGMPAFAAKQIASWLYDKKVTSIDEMTNLSLKHR-ELLKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHFVEAVYIPDED-----RATLCVSSQV 110 The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bpback to top |