CX287101

Overview
NameCX287101
Unique NameCX287101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287101_ssr105 microsatellite CX287101_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:100..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.055e-13
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S  +L       GQ +YRGKQLH  +Y++ V+ +      P+++R +L++  + +GR  I     A D T K L+ L D  +IETVGIP        RLT CVSSQV
Sbjct:    8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPTS-----KRLTVCVSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_CYAP8 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain PCC 8801) GN=rlmN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  130 VDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            V    LLG S  EL +     GQ +YRGKQLH  +Y++  + ++     P+++R  L    + +GR  I     A D T K L+ L D  +IETVGIP        RLT CVSSQV
Sbjct:    3 VTEETLLGKSLDELTQWVEKQGQPTYRGKQLHQWLYEKGARSLDEISVFPKTWREKL--INYPIGRSTIDYRTVAPDATRKYLLCLGDGLIIETVGIPT-----AKRLTVCVSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNR3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG+S+ +L+  A D G   +RG+QLH  +Y +  +   +   LP + R   Q+    +GR        A DGT+KLL+  +D   +ETVGIP  D     RLT CVSSQV
Sbjct:    6 LLGLSQAQLETWAKDQGLPPFRGRQLHDWLYAKGARHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLLLATDDGLSLETVGIPTRD-----RLTVCVSSQV 108          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_NITMS (Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  163 QELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GPMRLTACVSSQV 477
            +E++KL +D+G   YR  Q+   +Y +  K+I +  QLP+  R +  EAG+T+G       V + DG T KLL++L D   +ETV +  E  K  G  R T CVS+Q+
Sbjct:   10 EEMEKLVIDMGYDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGHPRSTICVSTQI 117          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Ribosomal RNA large subunit methyltransferase N OS=Synechocystis sp. (strain PCC 6803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LL +S  EL       GQ +YRGKQ+H  +Y++  + +     LP+ +R   +   + +GR  I     A D T K L++L D  +IETVGIP        RLT CVSSQV
Sbjct:    8 LLSLSLPELTDWVQTTGQPAYRGKQIHQWLYQKGARSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLRLADGLIIETVGIP-----SSKRLTVCVSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_HELMI (Ribosomal RNA large subunit methyltransferase N OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 474
            L G+  +E+  L    GQ ++RGKQ+   +  R V+E+     LPQ+ R  L EAGW     P  R   A DGT K L +L D  LIE+V +P    +   R+T C+S+Q
Sbjct:   35 LRGLFPEEIAALLTPWGQPTFRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRVTVCLSTQ 143          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ACIBL (Ribosomal RNA large subunit methyltransferase N OS=Acidobacteria bacterium (strain Ellin345) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  190 LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVED--------EKGPM--RLTACVSSQV 477
            LGQ +YR +QL   +Y+ ++  ++ F  LP   R +L+ +GW +    + +  T+ DGTV+ L++  D + +ETV +P  D        E GP   R T CVSSQV
Sbjct:    4 LGQPAYRSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRFTSTDGTVRYLLQFSDGQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQV 109          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_MOOTA (Ribosomal RNA large subunit methyltransferase N OS=Moorella thermoacetica (strain ATCC 39073) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP---IFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            L G+  QEL++LAV LG+  YRG+Q+   ++ R+ K IE    LP++FR  L      V  LP   +   + AADG T KLL+ L D   IE V +  +D  G  R TAC+SSQV
Sbjct:    7 LRGLLPQELEELAVRLGEAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA----LVAELPPVRVLNRLVAADGLTRKLLLGLGDGNSIECVLMIYKD--GRRRNTACLSSQV 115          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_LAWIP (Ribosomal RNA large subunit methyltransferase N OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LL ++  E + L V  L +++YR  Q+   ++++++ +IE+   LPQ  R  L  A   +    I     ++DGT K L++L D  LIETV IP  D+ G +R+T C+SSQV
Sbjct:    4 LLNITYPEFESLIVTTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLT-ALIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIRITQCLSSQV 114          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_BACFR (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides fragilis GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLGM+  ELQ +  DLG  ++  KQ+   +Y +KV  I+    L    R +L +  + +G       + + DGTVK L ++ DN  +E V IP ED     R T CVSSQV
Sbjct:    6 LLGMTLTELQSVTKDLGMPAFAAKQIASWLYDKKVTSIDEMTNLSLKHR-ELLKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHFVEAVYIPDED-----RATLCVSSQV 110          
The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RLMN_CYAA51.055e-1340.54Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CYAP84.009e-1339.66Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNR38.930e-1339.64Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NITMS8.930e-1337.96Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNY33.394e-1238.74Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_HELMI5.789e-1238.18Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACIBL5.789e-1235.85Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MOOTA1.290e-1142.61Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LAWIP3.752e-1136.61Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BACFR6.400e-1137.84Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC01004F12SK Veg1 Citrus clementina cDNA clone C01004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bp
ATGACTCTGCTTCGGCAAGTGATCTCTGCTCCCGTAGCACATGCGGTGGT
GCTTTCTCGCTCCTGCCTTGCAGTTTCTGTGACCCCGCGGCGCAAGTTAT
CTGTTTCTTCTTCTTCACGTGCCCCTCGCGTGGACGCCAACGTGCTCCTT
GGCATGTCCGAGCAGGAGCTTCAAAAACTCGCCGTCGACCTCGGCCAGCA
AAGTTACAGAGGGAAGCAGCTTCATCATCTAATTTACAAAAGAAAGGTCA
AAGAAATTGAAAATTTTATTCAACTGCCTCAGTCCTTCAGAAATGATCTC
CAAGAAGCTGGATGGACGGTTGGTCGCTTGCCGATTTTTCGCACGGTCAC
TGCAGCTGATGGAACTGTTAAATTGCTAATAAAGCTGGAAGACAACAGAT
TGATTGAAACTGTTGGCATACCAGTTGAAGACGAGAAAGGTCCCATGCGT
CTTACCGCTTGTGTGTCATCGCAGGTA
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