CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPFU (Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.202e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPCL (Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.202e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S S++AGLQFP GR+ R L+               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S S++AGLQFP GR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.711e-29
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 440
            S S++AGLQFP G V R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K S
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A8_ARATH (Putative histone H2A.8 OS=Arabidopsis thaliana GN=At4g13570 PE=5 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 60/91 (65.93%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  150 GLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 422
            G  F V R+H+ LK               Y  +ILEYLT EVL+LA N SKDLKVKRITPRHLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct:   28 GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYLTAE+LELAGNAS+D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.375e-25
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K S +
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKSSQ 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.375e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AZ_ASPFU3.202e-3066.02Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=... [more]
H2AZ_ASPCL3.202e-3066.02Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3... [more]
H2AZ_PHANO4.182e-3065.05Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AZ_COCIM4.182e-3065.05Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3... [more]
H2AZ_ASPTN2.711e-2965.05Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2AX_MOUSE1.066e-2562.26Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2A8_ARATH1.066e-2565.93Putative histone H2A.8 OS=Arabidopsis thaliana GN=... [more]
H2A1A_HUMAN1.066e-2560.75Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2A_URECA2.375e-2559.26Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2A_MYTTR2.375e-2559.26Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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