CX287116

Overview
NameCX287116
Unique NameCX287116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287116_ssr6 microsatellite CX287116_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig574 contig Ccv1_Contig574:107..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL+AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            VSRSS+AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K SK
Sbjct:   15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.290e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_ONCMY4.050e-2558.33Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_LITVA4.050e-2558.33Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_CAIMO4.050e-2561.32Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2A_ACRFO4.050e-2557.41Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A4_VOLCA4.050e-2560.19Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A4_CHICK4.050e-2561.32Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A1_XENLA4.050e-2558.88Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_SIPNU5.290e-2558.33Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_PARLI6.909e-2559.43Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_CHITH6.909e-2558.88Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01004H04SK Veg1 Citrus clementina cDNA clone C01004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bp
CGAGGAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGCGGGAAAATG
TCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAA
CAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTG
GTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCT
GCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCAT
TTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCA
AGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATC
CGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGG
AGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAG
AGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTT
TAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAAT
GCTAAAAAAAAAAAAAAAAAAAAAAA
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