CX287116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 SRSSRAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K + Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 SRSSRAGLQFPVGR+HRLL++ Y AA+LEYL+AE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 129 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 VSRSS+AGLQFPVGR+ R LK+ Y AA+LEYLTAEVLELAGNA++D K RI PRH+QLAIR DEEL L+ TIA GGV+P+IH L+ K SK Sbjct: 15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 446 SRSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K + Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.050e-25 Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 +RSSRAGLQFPVGRVHRLL++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 5.290e-25 Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 452 SRSSRAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K +++ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 446 SRSSRAGLQFPVGRVHR L++ Y AA+LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K + Sbjct: 16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CX287116 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25 Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 3 Query: 132 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 449 SRSSRAGLQFPVGR+HRLL++ Y AA++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K ++ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121 The following BLAST results are available for this feature:
BLAST of CX287116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287116 ID=CX287116; Name=CX287116; organism=Citrus clementina; type=EST; length=576bpback to top |