CX287117

Overview
NameCX287117
Unique NameCX287117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287117 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 4.945e-57
Identity = 122/208 (58.65%), Postives = 141/208 (67.79%), Query Frame = 2
Query:   11 LGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWV 634
            +GNAFLL GGDCAESFKE      R  F+        L FGGQ PVIKVGRMAGQFAKPR DPFEEK+G+ L    G  V  +A+    ++          S S A L ++  +A             +LDF +HSEQGDRYQELA+RVDEA+GFM A GLT +HPIM +TEFWTSHECLLLPYEQALTREDSTSGL+YDCSAHM+WV
Sbjct:  125 MGNAFLLQGGDCAESFKELMPLYSR-YFQNTASDECRLTFGGQCPVIKVGRMAGQFAKPRLDPFEEKDGLWLSGANGWPVAWEAYCKLQQL----------SPSRALLLVVCCYAESH--------PMDLDFVEHSEQGDRYQELAHRVDEALGFMDACGLTVDHPIMATTEFWTSHECLLLPYEQALTREDSTSGLFYDCSAHMLWV 313          
BLAST of CX287117 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 96/221 (43.44%), Postives = 126/221 (57.01%), Query Frame = 2
Query:   14 GNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTR-----------EDSTS---GLYYDCSAHMVWV 634
            G AFLL GGDCAE F     + I    ++LLQMS+VL++G   PV+++GRMAGQ+AKPRS P E  NG ++PS+RGD +NG  F P  R  DP+R++RAY  S ATLN +R     G A +     W L          +YQE  +R+ E + FM   G   N  + T  E +TSHE LLL YE+ LTR            DST+     YY+ SAH +W+
Sbjct:   66 GKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSPVETINGKEVPSFRGDILNG--FHPDERELDPNRLVRAYQYSSATLNYIRGAIGSGIADLHGPLDWGLGHVRDPALKSKYQETVDRIQEMLRFMHTIGADQNEKLST-VELFTSHEGLLLEYEEPLTRLLNHPSVRSYPPDSTTPPKKEYYNTSAHFLWI 283          
BLAST of CX287117 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 64/207 (30.92%), Postives = 87/207 (42.03%), Query Frame = 2
Query:   14 GNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWV 634
            G A ++  GDCAE   E  A+++     +L  ++       Q PV++VGR+AGQFAKPRS+  E    V+LP YRGD VNG       R  D  R++R                  GY A Q       D   H                 +G+   +G       +T +  WTSHE L+L YE    R D   G  +  S H  W+
Sbjct:   57 GEAMIIQCGDCAEDMDESAADHVTRKAALLDMLAGTFRLVTQQPVVRVGRIAGQFAKPRSNHSERIGDVELPVYRGDMVNGRDAVLGHRQHDAQRLVR------------------GYRAAQ-------DIMQH-----------------LGWKEPSG----QEQLTGSPAWTSHEMLVLDYELPQVRRDE-QGRTFLGSTHWPWI 216          
BLAST of CX287117 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 60/207 (28.99%), Postives = 88/207 (42.51%), Query Frame = 2
Query:   14 GNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWV 634
            G A ++  GDCAE   E   +++     VL  ++       Q PV++VGR+AGQFAKPRS+  E    V+LP YRGD VNG       R  D  R++R YS                                           A  + + +G+ A    +A+   ++ +  WT+HE L+L YE    R+D   G  +  S H  W+
Sbjct:   57 GEAMVIQSGDCAEDMDESTPDHVARKAAVLDILAGTFRLVTQQPVVRVGRIAGQFAKPRSNNNERIGDVELPVYRGDMVNGREAVCGHRQHDAQRLVRGYS------------------------------------------AARDIMQHLGWKA----SASQEQLSGSPAWTNHEMLVLDYELPQLRQDE-QGRVFLGSTHWPWI 216          
The following BLAST results are available for this feature:
BLAST of CX287117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AROF_CATRO4.945e-5758.65Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
AROF_NEUCR1.001e-4143.44Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
PHZC_PSEFL3.585e-1530.92Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
PHZC_PSECL3.585e-1528.99Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC01004H05SK Veg1 Citrus clementina cDNA clone C01004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287117 ID=CX287117; Name=CX287117; organism=Citrus clementina; type=EST; length=635bp
CGGCACGAGACTTGGGAACGCTTTCTTGCTTATGGGTGGAGATTGTGCTG
AGAGTTTCAAAGAATTCAATGCCAACAACATTCGTGACACCTTTCGTGTT
CTTCTTCAGATGAGTGTCGTCCTCATGTTTGGCGGCCAAATGCCTGTTAT
CAAGGTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGGTCAGATCCAT
TTGAAGAGAAAAATGGAGTGAAGCTGCCGAGTTACAGAGGTGATAATGTG
AATGGTGATGCATTTGATCCACAATCAAGAATTCCAGACCCCCATAGAAT
GATTAGAGCCTATAGCCAATCTGTGGCAACTTTGAATCTCTTAAGGGCAT
TTGCCACGGGAGGTTATGCAGCTATGCAGAGAGTGGCCCATTGGAATCTT
GATTTCACAGATCACAGCGAACAAGGGGATAGGTACCAGGAACTGGCTAA
TCGAGTTGATGAGGCCATTGGATTTATGGCTGCTGCAGGACTCACAGCCA
ACCACCCAATCATGACTTCAACAGAGTTTTGGACATCTCATGAGTGTTTG
CTCCTGCCTTATGAACAAGCTCTCACTAGGGAGGACTCAACTTCTGGGCT
TTACTATGACTGCTCTGCTCACATGGTTTGGGTTG
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