CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.901e-59
Identity = 111/143 (77.62%), Postives = 126/143 (88.11%), Query Frame = -1
Query:  195 MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSD 617
            MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KLT+TPGL+N SPYE+GW+IKVKPS+PS+
Sbjct:    1 MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = -1
Query:  144 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 512
            + L+Y   HEW + +GS   VGITD AQ  LG+VV+VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L++ P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = -1
Query:  144 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 512
            + L+Y   HEW + +GS   VGITD AQ  LG+VV+VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L++ P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_TERTT (Glycine cleavage system H protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvH PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = -1
Query:  141 SSVLDGLKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 524
            S +   LKY SSHEW +  E    T+GITDHAQ+ LG+VVFVE PE G+ V  G   GVVESVKA SD+ SP++GEVI VN  L E P  VN SPY+EGW  KVKPS  S+L+  MD +AY K  E+++
Sbjct:    2 SEIRSELKYLSSHEWARVEEDGTVTIGITDHAQEALGDVVFVETPEVGSQVSAGEEAGVVESVKAASDIYSPVTGEVIAVNELLEEAPETVNESPYDEGWFFKVKPSDVSELDGAMDSEAYVKSVEDDS 130          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SCHPO (Putative glycine cleavage system H protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPBP19A11.01 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.504e-34
Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = -1
Query:  132 STANALRISCASKTPAFALSRCFSSV--LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 593
            S  ++++     K  A  LS  +S+V       +   HEWVK +G V TVGIT +A + LGEVVFVELPE   +V  G G G VESVK+ SDV SP+SG V  +N  L ++P  V+SSP EEGW+ K+K SSP +L+SL++ ++Y +FC+EE+A+H
Sbjct:   14 SLTSSVKTGFCLKAAAPTLSMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEEDASH 169          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYMTH (Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.003e-33
Identity = 66/120 (55.00%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  147 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 506
            LKY+  HEW++ EG++  VGIT  AQD LG+VVFVELPE G  +KQ   FGVVESVK  SD+  P SG+V+EVNTKL  +P L+N  PY EGW++K++ S+P++L++L+D  AY  F +E
Sbjct:    8 LKYSKEHEWIRVEGNIGIVGITWFAQDQLGDVVFVELPEVGRELKQNEQFGVVESVKTVSDLYCPASGKVVEVNTKLESSPELINQDPYGEGWILKLELSNPAELDNLLDAAAYDAFTKE 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.235e-33
Identity = 70/121 (57.85%), Postives = 86/121 (71.07%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            L Y  +HEW + EG  ATVGITDHAQ+ LG+VVFVELPE G+SV+ G  FG +ESVKA SD+ SP+SGEV EVNT L E+P  VN  PY EGWL++V+ S   D   L+ P+ Y +  EEE
Sbjct:    8 LVYTRTHEWARIEGDAATVGITDHAQEELGDVVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVNTSLEESPEKVNEDPYGEGWLLRVRLSEEPD---LLSPEEYARRLEEE 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CARHZ (Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 64/127 (50.39%), Postives = 91/127 (71.65%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S V   LKY+  HEW+K +G++  +GITD AQ  LG++VF+ELP  G  +  G  FGVVESVKA SD+ +P+SG+V+EVN ++ E+P LVN  PY +GW+IKV+ S+ ++L+ L+ P+ Y K  EEE
Sbjct:    2 SVVPKDLKYSREHEWIKVDGNIGIIGITDFAQKSLGDIVFIELPGVGDEISAGDSFGVVESVKAASDLYAPVSGKVVEVNEEVIESPQLVNEDPYGKGWMIKVEISNEAELDELLSPEDYEKLLEEE 128          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33
Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = -1
Query:  147 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 524
            S+V   LKYASSHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE+I VN +L  +P LVNS+PY +GWL  +K S  S+L+SL+D +AY    EE
Sbjct:    2 SNVPADLKYASSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVNAELESSPELVNSAPYTDGWLFSIKASDESELDSLLDAEAYLATIEE 128          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ERWCT (Glycine cleavage system H protein OS=Erwinia carotovora subsp. atroseptica GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKYA+SHEWV HEG  + +VGIT+HAQ+ LG++VF++LPE G  V  G    V ESVKA SD+ +PISGEV+EVN  L  +P LVNS+PY +GWL ++K S  SDL+ L+D + Y    EE+
Sbjct:    2 SNVPTELKYATSHEWVLHEGDGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVNEDLENSPELVNSAPYTDGWLFRIKISDESDLDELLDAEGYQASLEED 129          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_FLAAU6.901e-5977.62Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_ANASK3.119e-3555.28Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_ANAD23.119e-3555.28Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_TERTT2.022e-3455.81Glycine cleavage system H protein OS=Teredinibacte... [more]
GCSH_SCHPO4.504e-3447.44Putative glycine cleavage system H protein, mitoch... [more]
GCSH_SYMTH1.003e-3355.00Glycine cleavage system H protein OS=Symbiobacteri... [more]
GCSH_RUBXD2.235e-3357.85Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_CARHZ4.980e-3350.39Glycine cleavage system H protein OS=Carboxydother... [more]
GCSH_YERE86.504e-3355.12Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_ERWCT6.504e-3353.91Glycine cleavage system H protein OS=Erwinia carot... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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