CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+++P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+++P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAB (Glycine cleavage system H protein OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 64/125 (51.20%), Postives = 93/125 (74.40%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY++ HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSNEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAR (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MRSA252) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAN (Glycine cleavage system H protein OS=Staphylococcus aureus (strain N315) GN=gcvH PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAM (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAA9 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAA2 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAA1 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S LE+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_VIBHB (Glycine cleavage system H protein OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            LK+  SHEWV+  G   AT+GI++HAQ+ LG+VVFV+LP+    V+ G  F +VESVKA SD+ SPI+GEV+E+N +L ++P L+N  PYE GW++KVK S PS+L+ L D + Y    EEE
Sbjct:    5 LKFTDSHEWVRDNGDGTATIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPITGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_VIBVY1.892e-3251.64Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU1.892e-3251.64Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_STAAB2.472e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAR3.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAN3.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAM3.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA93.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA23.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA13.228e-3251.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_VIBHB4.216e-3252.46Glycine cleavage system H protein OS=Vibrio harvey... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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