CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THEMA (Glycine cleavage system H protein OS=Thermotoga maritima GN=gcvH PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = -1
Query:  144 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 503
            KY  +HEWV  E  VATVGIT+HAQ+ LG+VV+V+LPE G  VK+G     +ESVKA +DV +P+SG+++EVN KL   P L+N  P  EGWL K++ S   +LE L+D QAY +FC +E
Sbjct:    5 KYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO7I (Glycine cleavage system H protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 67/128 (52.34%), Postives = 90/128 (70.31%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++EVN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVEVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAW (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MW2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAS (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MSSA476) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VAT+GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEAM (Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K +    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  Y +GW  ++KPS  S+L+SL+D + Y    +EE
Sbjct:    2 SNIPSELKYASSHEWIRKEDDGTYTVGITEHAQELLGDMVFVELPEVGDTVSAGEDCAVAESVKAASDIYAPISGEVIAVNESLEDSPELVNSDAYGDGWFFRIKPSDESELDSLLDAEGYQAVIDEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALAR (Glycine cleavage system H protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY +GW+ K+K S+ S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYADGWIFKIKASNESELESLLDATAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S +   L+Y  SHEWV   G    T+GITDHAQ+ LG+VVFVELPETG  +  G  FGV+ESVKA SD+  P+SGE+I VN  L + P  VN +PYE+GW+IK+K + P  LESL+D  AY      E
Sbjct:    2 SHIPANLRYTDSHEWVLDNGDGTVTIGITDHAQEALGDVVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVNESLEDAPETVNDNPYEDGWIIKLKLAEPEALESLLDATAYDALVSAE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PECCP (Glycine cleavage system H protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.191e-32
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY +SHEWV HEG  + +VGIT+HAQ+ LG++VF++LPE G  V  G    V ESVKA SD+ +PISGE++EVN  L  +P LVNS+PY +GWL +++ S  SDL+ L+D + Y    EE+
Sbjct:    2 SNVPAELKYTTSHEWVLHEGGGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEIVEVNDDLESSPELVNSAPYADGWLFRIRISDESDLDELLDAEGYQASLEED 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_YERPY (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = -1
Query:  147 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 524
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_YERPS (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = -1
Query:  147 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 524
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_THEMA4.216e-3253.33Glycine cleavage system H protein OS=Thermotoga ma... [more]
GCSH_ECO7I4.216e-3252.34Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_STAAW5.506e-3250.40Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAS5.506e-3250.40Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SHEAM5.506e-3253.13Glycine cleavage system H protein OS=Shewanella am... [more]
GCSH_SALAR5.506e-3251.56Glycine cleavage system H protein OS=Salmonella ar... [more]
GCSH_CHRSD5.506e-3253.13Glycine cleavage system H protein OS=Chromohalobac... [more]
GCSH_PECCP7.191e-3251.56Glycine cleavage system H protein OS=Pectobacteriu... [more]
GCSH_YERPY9.392e-3252.76Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPS9.392e-3252.76Glycine cleavage system H protein OS=Yersinia pseu... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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