CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHISS (Glycine cleavage system H protein OS=Shigella sonnei (strain Ss046) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHIFL (Glycine cleavage system H protein OS=Shigella flexneri GN=gcvH PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHIF8 (Glycine cleavage system H protein OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHIBS (Glycine cleavage system H protein OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHIB3 (Glycine cleavage system H protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALTY (Glycine cleavage system H protein OS=Salmonella typhimurium GN=gcvH PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALTI (Glycine cleavage system H protein OS=Salmonella typhi GN=gcvH PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALSV (Glycine cleavage system H protein OS=Salmonella schwarzengrund (strain CVM19633) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALPK (Glycine cleavage system H protein OS=Salmonella paratyphi A (strain AKU_12601) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALPC (Glycine cleavage system H protein OS=Salmonella paratyphi C (strain RKS4594) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWIFKIKASDESELESLLDATAYEALLEDE 129
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_SHISS2.092e-3151.56Glycine cleavage system H protein OS=Shigella sonn... [more]
GCSH_SHIFL2.092e-3151.56Glycine cleavage system H protein OS=Shigella flex... [more]
GCSH_SHIF82.092e-3151.56Glycine cleavage system H protein OS=Shigella flex... [more]
GCSH_SHIBS2.092e-3151.56Glycine cleavage system H protein OS=Shigella boyd... [more]
GCSH_SHIB32.092e-3151.56Glycine cleavage system H protein OS=Shigella boyd... [more]
GCSH_SALTY2.092e-3151.56Glycine cleavage system H protein OS=Salmonella ty... [more]
GCSH_SALTI2.092e-3151.56Glycine cleavage system H protein OS=Salmonella ty... [more]
GCSH_SALSV2.092e-3151.56Glycine cleavage system H protein OS=Salmonella sc... [more]
GCSH_SALPK2.092e-3151.56Glycine cleavage system H protein OS=Salmonella pa... [more]
GCSH_SALPC2.092e-3151.56Glycine cleavage system H protein OS=Salmonella pa... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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