CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO5E (Glycine cleavage system H protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO57 (Glycine cleavage system H protein OS=Escherichia coli O157:H7 GN=gcvH PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO55 (Glycine cleavage system H protein OS=Escherichia coli (strain 55989 / EAEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO27 (Glycine cleavage system H protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEAYGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECO24 (Glycine cleavage system H protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1 
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYETLLEDE 129
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAT (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = -1 
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VA +GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAE (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Newman) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = -1 
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VA +GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAAC (Glycine cleavage system H protein OS=Staphylococcus aureus (strain COL) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = -1 
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VA +GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAA8 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = -1 
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VA +GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAA3 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = -1 
Query:  147 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 521
            +V + LKY+  HEWVK EG+VA +GIT++AQ  LG++VFVELPET   + +G  FG VESVK  S++ +PISG+V+EVN +L ++P  VN SPYE+ W++KV+ S  S +E+L+  + Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_ECO5E2.092e-3151.56Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_ECO572.092e-3151.56Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_ECO552.092e-3151.56Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_ECO272.092e-3151.56Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_ECO242.092e-3151.56Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_STAAT2.733e-3149.60Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAE2.733e-3149.60Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAC2.733e-3149.60Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA82.733e-3149.60Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA32.733e-3149.60Glycine cleavage system H protein OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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