CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHIDS (Glycine cleavage system H protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDVLSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB5 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNSS Y EGW  +V PS  S++++L+D + Y    +EE
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SALPB (Glycine cleavage system H protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYVGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MOUSE (Glycine cleavage system H protein, mitochondrial OS=Mus musculus GN=Gcsh PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = -1
Query:  156 ALRMWASSTANALRIS----CASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 614
            +LR+ A S   AL       C     A    R  S++L   K+   HEW+  E  + TVGI++ AQ+ LG+VV+  LPE G  +K+   FG +ESVKA S++ SP+SGEV EVN  L E PGLVN S YE+GWLIK+  S PS+L+ LM  +AY K+
Sbjct:    8 SLRVVAYSLRTALAFCSPRPCVPSAAAVRSLRTGSALLSVRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKY 164          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_METI4 (Glycine cleavage system H protein OS=Methylacidiphilum infernorum (isolate V4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = -1
Query:  144 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 500
            Y  +HEWV   G VATVGIT+HAQ  L ++V++ELP+ G    Q    GVVESVKA SD+ +P+SGE++ VNT+L E P L+NS+PY EGW+ K+K ++P +L SL D +AY +  +++
Sbjct:    9 YTDTHEWVNVSGDVATVGITEHAQRELSDIVYIELPKVGERFNQKAVVGVVESVKAASDLYAPVSGEILAVNTQLVEQPSLINSNPYGEGWIFKMKMTNPDELSSLKDAEAYQELLQDK 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPL (Glycine cleavage system H protein OS=Legionella pneumophila (strain Lens) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = -1
Query:  141 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 515
            ++ LK+ ++HEW++ +    TVGITDHAQ+ LG++VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:    1 MNDLKFTTTHEWLREDEEEVTVGITDHAQELLGDMVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPH (Glycine cleavage system H protein OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = -1
Query:  141 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 515
            ++ LK+ ++HEW++ +    TVGITDHAQ+ LG++VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:    1 MNDLKFTTTHEWLREDEEEVTVGITDHAQELLGDMVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPC (Glycine cleavage system H protein OS=Legionella pneumophila (strain Corby) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = -1
Query:  141 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 515
            ++ LK+ ++HEW++ +    TVGITDHAQ+ LG++VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:    1 MNDLKFTTTHEWLREDEEEVTVGITDHAQELLGDMVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_LEGPA (Glycine cleavage system H protein OS=Legionella pneumophila (strain Paris) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = -1
Query:  141 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 515
            ++ LK+ ++HEW++ +    TVGITDHAQ+ LG++VFVELPE G  V  G   GVVESVKA SD  +PISG V  VN  + + P LVN  PY EGWL+K+KPS P +++SL+  + Y     EEN
Sbjct:    1 MNDLKFTTTHEWLREDEEEVTVGITDHAQELLGDMVFVELPEIGDEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKPSHPDEIKSLLSDEQYQNEIAEEN 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ECOL6 (Glycine cleavage system H protein OS=Escherichia coli O6 GN=gcvH PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 65/128 (50.78%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNIPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_SHIDS2.733e-3151.56Glycine cleavage system H protein OS=Shigella dyse... [more]
GCSH_SHEB52.733e-3153.91Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SALPB2.733e-3151.56Glycine cleavage system H protein OS=Salmonella pa... [more]
GCSH_MOUSE2.733e-3145.86Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_METI42.733e-3150.42Glycine cleavage system H protein OS=Methylacidiph... [more]
GCSH_LEGPL2.733e-3151.20Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPH2.733e-3151.20Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPC2.733e-3151.20Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_LEGPA2.733e-3151.20Glycine cleavage system H protein OS=Legionella pn... [more]
GCSH_ECOL62.733e-3150.78Glycine cleavage system H protein OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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