CX287263

Overview
NameCX287263
Unique NameCX287263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:967..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDHGV AVGYGTE+  DYW+VKNSWGSSWG+ GYI+M RN        CGIA E SY
Sbjct:  264 TFLDHGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRN----RDNNCGIASEPSY 318          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SY
Sbjct:  284 TAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSY 340          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            SLDHGV  VGYG+ +G DYWI++NSWG +WG+ GY++++RN+     GKCGIAM  SY
Sbjct:  290 SLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPF-GKCGIAMMPSY 346          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SY
Sbjct:  284 TAVDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSY 340          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            S +H +T VGYGTEN  D+WIVKNSWG +WGE GYIR ERN+     GKCGI   ASY
Sbjct:  158 SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASY 214          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASY
Sbjct:  293 TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASY 351          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASY
Sbjct:  293 TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASY 351          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDHGV  VGYGT  +G  YW VKNSWG  WGE GYIRMER ++    G CGIAMEASY
Sbjct:  282 TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASY 340          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM ASY
Sbjct:  284 TDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNIS-KKEGLCGIAMMASY 342          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T+ +HGV  VGYGT++G +YWIV+NSWG +WG  GYI MERNVA +  G CGIA   SY
Sbjct:  154 TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSY 211          
The following BLAST results are available for this feature:
BLAST of CX287263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CYSP3_HOMAM3.020e-1666.10Digestive cysteine proteinase 3 OS=Homarus america... [more]
ACTN_ACTDE3.944e-1664.41Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CPR1_ARATH5.151e-1658.62Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
ACTN_ACTCH5.151e-1664.41Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPGP2_ZINOF8.786e-1663.79Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CYSP2_HORVU1.147e-1566.67Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU1.147e-1566.67Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSEP_RICCO1.147e-1566.67Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSEP_VIGMU5.695e-1563.33Vignain OS=Vigna mungo PE=1 SV=1[more]
ERVB_TABDI7.438e-1561.02Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC01006F02SK Veg1 Citrus clementina cDNA clone C01006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287263 ID=CX287263; Name=CX287263; organism=Citrus clementina; type=EST; length=544bp
GGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAAT
GGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGA
GGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCA
AGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAAT
CCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGCTGT
GTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCT
TTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCT
GCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCAT
CTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGG
GAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCATGGA
AATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTA
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