CX287263

Overview
NameCX287263
Unique NameCX287263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:967..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAM 167
            TSL+H +T +GYG ++ G  YWIV+NSWGSSWGEGGY+RM R V+ + +G CGIAM
Sbjct:  275 TSLNHAITIIGYGQDSSGTKYWIVRNSWGSSWGEGGYVRMARGVSSS-SGVCGIAM 329          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDHGV AVGYG+  G+DY IVKNSWG  WGE G+IRM+RN  G   G CGI   ASY
Sbjct:  293 TDLDHGVAAVGYGSSKGSDYVIVKNSWGPRWGEKGFIRMKRN-TGKPEGLCGINKMASY 350          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM  SY
Sbjct:  284 TDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNIS-KKEGLCGIAMLPSY 342          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            + LDH V AVGYG+E G D+W+VKNSW +SWGE GYI+M RN        CGIA +A Y
Sbjct:  265 SQLDHAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARN----RNNNCGIATDACY 319          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +LDHGV  VGYGT E+G DYW+VKNSWG++WGE GYI+M RN       +CGIA  +SY
Sbjct:  282 NLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARN----QNNQCGIATASSY 336          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            LDH V AVGYG+E G D+W+VKNSW +SWG+ GYI+M RN        CGIA  ASY
Sbjct:  268 LDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRN----RNNNCGIATVASY 320          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            LDHGV AVGYG+  G+DY IVKNSWG  WGE GYIR++RN  G   G CGI   AS+
Sbjct:  296 LDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEKGYIRLKRN-TGKPEGLCGINKMASF 351          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            S +H  T  G  TEN  DYW VKNSWG +WGE GYIR+ERN+A + +GKCGIA+  SY
Sbjct:  158 SANHYRTVGGRETENDKDYWTVKNSWGKNWGESGYIRVERNIAES-SGKCGIAISPSY 214          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            LDHGV AVG GT+NG DY+IVKNSWG SWG  GYI M RN        CGI+  ASY
Sbjct:  282 LDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARN----KDNNCGISTMASY 334          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEAS 176
            ++H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  267 VNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
The following BLAST results are available for this feature:
BLAST of CX287263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
BROM1_ANACO1.269e-1462.50Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
XCP1_ARATH1.657e-1464.41Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CYSEP_PHAVU2.826e-1461.67Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
CYSP1_HOMAM3.691e-1457.63Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATL_SARPE3.691e-1461.02Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CYSP2_HOMAM6.296e-1459.65Digestive cysteine proteinase 2 OS=Homarus america... [more]
XCP2_ARATH1.074e-1363.16Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CPGP1_ZINOF1.403e-1360.34Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CYSP3_DICDI3.125e-1363.16Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATLL_FASHE4.081e-1362.50Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]

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Properties
Property NameValue
Genbank descriptionC01006F02SK Veg1 Citrus clementina cDNA clone C01006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287263 ID=CX287263; Name=CX287263; organism=Citrus clementina; type=EST; length=544bp
GGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAAT
GGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGA
GGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCA
AGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAAT
CCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGCTGT
GTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCT
TTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCT
GCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCAT
CTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGG
GAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCATGGA
AATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTA
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