CX287263

Overview
NameCX287263
Unique NameCX287263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:967..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 3
Query:   12 DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            DH V  VGYGT +   DYW+++NSWG  WGEGGY+R++RN     TGKC +A+   Y
Sbjct:  289 DHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVY 344          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SY
Sbjct:  275 VNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSY 327          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +++HGV  VGYG  NG DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  275 NVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSG----NHCGIASYPSY 328          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  284 NVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  277 VNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T +DH VTAVGYG   G  Y ++KNSWG  WGE GYIR+ R  +G   G CG+   + Y
Sbjct:  287 TKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRI-RRASGNSPGVCGVYRSSYY 344          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +++HGV  VGYGT +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  274 NMNHGVLVVGYGTLDGKDYWLVKNSWGLHFGDQGYIRMARN----NKNHCGIASYCSY 327          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SY
Sbjct:  275 NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSY 328          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T +DH VTAVGYG   G  Y ++KNSWG++WGE GYIR++R   G   G CG+   + Y
Sbjct:  287 TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYY 344          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          C IA  ASY
Sbjct:  306 VNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCAIATCASY 357          
The following BLAST results are available for this feature:
BLAST of CX287263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CPR2_ARATH7.697e-1252.63Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATS_SAIBB7.697e-1256.14Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_CANFA1.313e-1155.17Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATS_MOUSE1.715e-1155.17Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATH_MOUSE1.715e-1156.14Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
PAPA4_CARPA2.239e-1150.85Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATS_RAT2.239e-1155.17Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_HUMAN2.239e-1155.17Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
PAPA3_CARPA2.925e-1150.85Caricain OS=Carica papaya PE=1 SV=2[more]
ALEU_HORVU3.820e-1150.88Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC01006F02SK Veg1 Citrus clementina cDNA clone C01006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287263 ID=CX287263; Name=CX287263; organism=Citrus clementina; type=EST; length=544bp
GGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAAT
GGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGA
GGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCA
AGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAAT
CCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGCTGT
GTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCT
TTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCT
GCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCAT
CTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGG
GAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCATGGA
AATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTA
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