CX287263

Overview
NameCX287263
Unique NameCX287263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:967..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNV 131
            L+H V  VGYGTE G  YW +KNSWGS WGE GY R++RN+
Sbjct:  281 LNHAVLLVGYGTEGGVSYWTLKNSWGSDWGEDGYFRVKRNI 321          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG +NG  YWIVKNSWGS+WG  GY  +ER         CG+A  ASY
Sbjct:  277 VNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERG-----KNMCGLAACASY 328          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  303 VNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  305 VNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG ENG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  279 VNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
The following BLAST results are available for this feature:
BLAST of CX287263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CATV_NPVAH4.989e-1163.41Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATH_RAT4.989e-1154.39Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
ALEU_ARATH4.989e-1150.88Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP2_MAIZE6.516e-1149.12Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATH_PIG8.510e-1154.39Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006F02SK Veg1 Citrus clementina cDNA clone C01006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287263 ID=CX287263; Name=CX287263; organism=Citrus clementina; type=EST; length=544bp
GGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAAT
GGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGA
GGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCA
AGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAAT
CCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGCTGT
GTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCT
TTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCT
GCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCAT
CTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGG
GAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCATGGA
AATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTA
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