CX287272

Overview
NameCX287272
Unique NameCX287272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSAN-FDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREA--ETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP +P R+A RILGMGDVLS +E     +    AE+L  K+   + FD NDFL+Q R +  MG M+  +G +PGMG+I P  V+    +  L  MEA+I ++T +ER KP ++  S  R +R+A   G
Sbjct:  282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCG 407          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP +P RMA RILGMGDVL+ +EKA   +  + A+EL +K+ + +F  +DFL+Q   V  MG +   +  +PG GK+   + ++  E  L  +EA+I+++T  E+E+P ++  S  R KR+A+ SG
Sbjct:  283 LEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSG 407          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPA-QVREAETSLKI--MEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            L+   P R+ GR++G GD++S  EK   V+   +A++L KK+    F FNDFL Q   V ++GSMS  I  IPG+G +  A +  + E+SL++  ++A++ ++T +E+E P +L  S  R KR+A  SG
Sbjct:  274 LDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSG 400          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18
Identity = 51/131 (38.93%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            LE     R+A RIL MGD++SFV+KA  ++  E+AE+   K+ S  FD ND+L+Q R++ +MG     +  +PG GKI   Q+ +++ + KI+   EA+I ++T +ER+ P ++  S  R KR+A  +G T
Sbjct:  283 LEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMT 410          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 2
Query:   95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            R+A RIL MGD++SFVEKA  ++  E AE+   K+    FD ND+L+Q +++ ++G     +  +PG GKI   Q+ +++ + KI+   EA+I ++TP+ER  P ++  S  R KR+A  +G T
Sbjct:  290 RIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTT 410          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 2
Query:   86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            +P RMA RILGMGDVLS +E+A +V   E AE    KI++      DFL+Q   V +MG +   +G +PG G++     +  +  L  ++A+I  +TP+ER  P ++  S  R  R+A  SG T
Sbjct:  292 HPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP YP R+AGRILGMGDV S  EK        +A +  K++        DFLKQ + + R+G  S  +G +PG+    P  ++  E ++K +EA++ ++TPEER+ P +L  S  R KR+A+ SG
Sbjct:  279 LEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSG 393          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            R+A RIL MGD++SFV+KA  ++  E+AE    K+ S  FD ND+LK  R++ +MG     +  +PG GKI   Q+ +++   +I+   EA+I ++T +ER+ P ++  S  R KR+A  +G T
Sbjct:  290 RLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMT 410          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 2
Query:   86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            +P RMA RILGMGDVLS +E+A +V   + AEE   KI +      DFL+Q   V +MG +   +G +PG  ++  A     +  L  ++A+I  +TP+ER  P ++  S  R  R+A  SG T
Sbjct:  292 HPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 2
Query:   86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            +P RMA RILGMGDVLS +E+A +V   + AEE   KI +      DFL+Q   V +MG +   +G +PG  ++  A     +  L  ++A+I  +TP+ER  P ++  S  R  R+A  SG T
Sbjct:  292 HPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413          
The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SRP54_ECO571.258e-1842.64Signal recognition particle protein OS=Escherichia... [more]
SRP54_BACSU1.643e-1840.16Signal recognition particle protein OS=Bacillus su... [more]
SRP54_HELPY2.803e-1838.76Signal recognition particle protein OS=Helicobacte... [more]
SRP54_RICPR3.661e-1838.93Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICBR3.661e-1838.71Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_MYCLE6.245e-1838.71Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_THEAQ1.817e-1740.48Signal recognition particle protein OS=Thermus aqu... [more]
SRP54_RICTY1.817e-1738.71Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_MYCTU1.817e-1738.71Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO1.817e-1738.71Signal recognition particle protein OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC01006F11SK Veg1 Citrus clementina cDNA clone C01006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bp
AGACATGCTCATGGCGTATATATTTTTAGATGGTCTACATGATATGTGAA
AATTGAAGCTAACCTGGTTCTTCCTTGAACCTTGCTACCCATATCGCATG
GCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTCGTAGAGAAGGC
ACACGAAGTTATGCCGCACGAGGATGCTGAAGAACTGCTGAAGAAGATAA
TGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTT
GCACGTATGGGTTCGATGAGTCGTGCTATAGGAACGATCCCTGGAATGGG
GAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGACGAGTTTAAAAATAA
TGGAAGCACTGATCGAAGCACTGACGCCTGAGGAAAGGGAGAAACCACAT
CTGTTGGCTGAATCTCCTGTCAGAACAAAAAGAGTTGCTCAAGAGTCTGG
GAAAACAGAACA
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