CX287272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSAN-FDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREA--ETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP +P R+A RILGMGDVLS +E + AE+L K+ + FD NDFL+Q R + MG M+ +G +PGMG+I P V+ + L MEA+I ++T +ER KP ++ S R +R+A G Sbjct: 282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCG 407
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18 Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP +P RMA RILGMGDVL+ +EKA + + A+EL +K+ + +F +DFL+Q V MG + + +PG GK+ + ++ E L +EA+I+++T E+E+P ++ S R KR+A+ SG Sbjct: 283 LEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSG 407
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18 Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPA-QVREAETSLKI--MEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 L+ P R+ GR++G GD++S EK V+ +A++L KK+ F FNDFL Q V ++GSMS I IPG+G + A + + E+SL++ ++A++ ++T +E+E P +L S R KR+A SG Sbjct: 274 LDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSG 400
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18 Identity = 51/131 (38.93%), Postives = 82/131 (62.60%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 LE R+A RIL MGD++SFV+KA ++ E+AE+ K+ S FD ND+L+Q R++ +MG + +PG GKI Q+ +++ + KI+ EA+I ++T +ER+ P ++ S R KR+A +G T Sbjct: 283 LEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMT 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18 Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 2 Query: 95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 R+A RIL MGD++SFVEKA ++ E AE+ K+ FD ND+L+Q +++ ++G + +PG GKI Q+ +++ + KI+ EA+I ++TP+ER P ++ S R KR+A +G T Sbjct: 290 RIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTT 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18 Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 2 Query: 86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 +P RMA RILGMGDVLS +E+A +V E AE KI++ DFL+Q V +MG + +G +PG G++ + + L ++A+I +TP+ER P ++ S R R+A SG T Sbjct: 292 HPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17 Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP YP R+AGRILGMGDV S EK +A + K++ DFLKQ + + R+G S +G +PG+ P ++ E ++K +EA++ ++TPEER+ P +L S R KR+A+ SG Sbjct: 279 LEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSG 393
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17 Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 2 Query: 95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 R+A RIL MGD++SFV+KA ++ E+AE K+ S FD ND+LK R++ +MG + +PG GKI Q+ +++ +I+ EA+I ++T +ER+ P ++ S R KR+A +G T Sbjct: 290 RLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMT 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17 Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 2 Query: 86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 +P RMA RILGMGDVLS +E+A +V + AEE KI + DFL+Q V +MG + +G +PG ++ A + L ++A+I +TP+ER P ++ S R R+A SG T Sbjct: 292 HPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17 Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 2 Query: 86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 +P RMA RILGMGDVLS +E+A +V + AEE KI + DFL+Q V +MG + +G +PG ++ A + L ++A+I +TP+ER P ++ S R R+A SG T Sbjct: 292 HPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVT 413 The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bpback to top |