CX287272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.048e-17 Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460 LEP P + R+LGMGD+ S +EKA + M E EE + IM F N+ + Q + MGSM + + IPG G P ++ E +K + +I ++T EERE P ++ S R +R+A+ SG TE Sbjct: 281 LEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKAS--RIRRIARGSGTTE 407
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.287e-17 Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGK 454 LE +P R+A RILG+GDV++ VEKA EV + + + K+ D D L + +MGS+S + +PG ++ V E +K+ + LI ++T EER P L+ P R +R+ + SG+ Sbjct: 280 LEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGR 406
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16 Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGK 454 LE +P R+A RILG+GDV+S VEKA +V +D + + K+ D D L + + +MGS+S I +P ++ E +++ + LI ++T EER P L+ P R +R+ + SG+ Sbjct: 280 LEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGR 406
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.901e-15 Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LE P R R+LGMGD+ S +EK EV E AEE L I+S F D Q + +MG + + + +PG GK+ R E +++ +++++T EE EKP ++ S R +R+A+ SG Sbjct: 278 LEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHS--RIRRIARGSG 401
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15 Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP P + R+LGMGD+ S +EK +++ +D EE L +M F N+ Q +++MGSM + + IPGMG P + E LK + +++++T E+E P ++ S R KR+A+ +G Sbjct: 281 LEPFDPKKFISRLLGMGDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAG 404
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14 Identity = 38/125 (30.40%), Postives = 76/125 (60.80%), Query Frame = 2 Query: 86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460 YP RMA R++GMGD+ + E+A E + ++ + ++ FD D Q +A+MGS+++ + +P + K++ +Q++EA+ L + L++++T +ER P +L ++ R R+ + SG++E Sbjct: 286 YPKRMADRLMGMGDIETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSE 408
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.456e-14 Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHED-AEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 LEP P R R+LG+GD+ +EK E+ ++ EE ++K + F+ D Q + +MG + + + IPG+G P VR E LK + +++++T EE E P ++ S R KR+A+ SG T Sbjct: 281 LEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGAT 408
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14 Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHED-AEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP P R R+LG+GD+ +EK E+ ++ EE L+K + F+ D Q + +MG + + + IPGMG P VR E LK + +++++T EE E P ++ S R KR+A+ SG Sbjct: 281 LEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSG 406
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.189e-14 Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LE P + RILGMGD+ S +EK ++M E EE + I+ F + Q T+++MG M + + IPGMG P + + E LK + +++++T EE+E P L+ S R +R+A+ +G Sbjct: 281 LEQFDPKKFISRILGMGDLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAG 404
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14 Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LE P + R+LGMGD+ S +EK +VM E EE + I+ F + Q T+++MG M + +G IPG G P + + E LK + +++++T EE+E P L+ S R +R+A+ +G Sbjct: 281 LETFDPKKFISRLLGMGDLDSLLEKTEDVMD-ESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAG 404 The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bpback to top |