CX287272

Overview
NameCX287272
Unique NameCX287272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.048e-17
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460
            LEP  P +   R+LGMGD+ S +EKA + M  E  EE +  IM   F  N+ + Q   +  MGSM + +  IPG G   P ++    E  +K  + +I ++T EERE P ++  S  R +R+A+ SG TE
Sbjct:  281 LEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKAS--RIRRIARGSGTTE 407          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.287e-17
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGK 454
            LE  +P R+A RILG+GDV++ VEKA EV   +   + + K+     D  D L     + +MGS+S  +  +PG   ++   V   E  +K+ + LI ++T EER  P L+   P R +R+ + SG+
Sbjct:  280 LEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGR 406          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGK 454
            LE  +P R+A RILG+GDV+S VEKA +V   +D  + + K+     D  D L   + + +MGS+S  I  +P    ++       E  +++ + LI ++T EER  P L+   P R +R+ + SG+
Sbjct:  280 LEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGR 406          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.901e-15
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LE   P R   R+LGMGD+ S +EK  EV   E AEE L  I+S  F   D   Q   + +MG + + +  +PG GK+     R  E +++    +++++T EE EKP ++  S  R +R+A+ SG
Sbjct:  278 LEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHS--RIRRIARGSG 401          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP  P +   R+LGMGD+ S +EK  +++  +D EE L  +M   F  N+   Q   +++MGSM + +  IPGMG   P    +  E  LK  + +++++T  E+E P ++  S  R KR+A+ +G
Sbjct:  281 LEPFDPKKFISRLLGMGDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAG 404          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 38/125 (30.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   86 YPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460
            YP RMA R++GMGD+ +  E+A E +     ++ + ++    FD  D   Q   +A+MGS+++ +  +P + K++ +Q++EA+  L +   L++++T +ER  P +L ++  R  R+ + SG++E
Sbjct:  286 YPKRMADRLMGMGDIETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSE 408          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.456e-14
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHED-AEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            LEP  P R   R+LG+GD+   +EK  E+   ++  EE ++K +   F+  D   Q   + +MG + + +  IPG+G   P   VR  E  LK  + +++++T EE E P ++  S  R KR+A+ SG T
Sbjct:  281 LEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGAT 408          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHED-AEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQ-VREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP  P R   R+LG+GD+   +EK  E+   ++  EE L+K +   F+  D   Q   + +MG + + +  IPGMG   P   VR  E  LK  + +++++T EE E P ++  S  R KR+A+ SG
Sbjct:  281 LEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSG 406          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.189e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LE   P +   RILGMGD+ S +EK  ++M  E  EE +  I+   F   +   Q  T+++MG M + +  IPGMG   P +  +  E  LK  + +++++T EE+E P L+  S  R +R+A+ +G
Sbjct:  281 LEQFDPKKFISRILGMGDLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAG 404          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVRE-AETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LE   P +   R+LGMGD+ S +EK  +VM  E  EE +  I+   F   +   Q  T+++MG M + +G IPG G   P +  +  E  LK  + +++++T EE+E P L+  S  R +R+A+ +G
Sbjct:  281 LETFDPKKFISRLLGMGDLDSLLEKTEDVMD-ESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAG 404          
The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SRP54_METJA4.048e-1737.69Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_MYCPN5.287e-1734.65Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_MYCGE2.624e-1633.86Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_METTH2.901e-1535.71Signal recognition 54 kDa protein OS=Methanobacter... [more]
SRP54_META38.440e-1534.65Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_MYCMY1.102e-1430.40Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_PYRKO2.456e-1433.85Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_THEON3.207e-1435.16Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_METM74.189e-1434.65Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METVS5.471e-1434.65Signal recognition 54 kDa protein OS=Methanococcus... [more]

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Properties
Property NameValue
Genbank descriptionC01006F11SK Veg1 Citrus clementina cDNA clone C01006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bp
AGACATGCTCATGGCGTATATATTTTTAGATGGTCTACATGATATGTGAA
AATTGAAGCTAACCTGGTTCTTCCTTGAACCTTGCTACCCATATCGCATG
GCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTCGTAGAGAAGGC
ACACGAAGTTATGCCGCACGAGGATGCTGAAGAACTGCTGAAGAAGATAA
TGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTT
GCACGTATGGGTTCGATGAGTCGTGCTATAGGAACGATCCCTGGAATGGG
GAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGACGAGTTTAAAAATAA
TGGAAGCACTGATCGAAGCACTGACGCCTGAGGAAAGGGAGAAACCACAT
CTGTTGGCTGAATCTCCTGTCAGAACAAAAAGAGTTGCTCAAGAGTCTGG
GAAAACAGAACA
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