CX287272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.141e-11 Identity = 42/129 (32.56%), Postives = 75/129 (58.14%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSA-NFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITP--AQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP +P R+A RILGM D++S +E E + ++L KK+ +F+ NDFL Q + + ++G ++ +++ + + + +LK +EA+I ++TP+ER KP ++ S R +R+A SG Sbjct: 282 LEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSG 408
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.490e-11 Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 89 PYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIP--GM-GKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 P R+LGMGD+ + VE+A+EV+ +D ++K+M F ND Q + +MG + + + +P G+ G IT + + LK + +++++T ER+ P L+ S R RVA SGK+ Sbjct: 281 PDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAAERDDPKLIGSS--RIARVAHGSGKS 402
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11 Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPH-EDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQV-REAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP P R R+LG+GD+ +EK E+ E EE L++ + F D Q + +MG + + + IPG+G P +V E L+ + +++++T EE P ++ S R KR+A+ SG Sbjct: 281 LEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS--RIKRIARGSG 406
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11 Identity = 39/131 (29.77%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMS--ANFDFNDFLKQTRTVARMGSMSRAIGTIPGMG---KITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LE P R RILGMGD+ S +EK + +E ++ ++++MS A D KQ + +MG +++ + +PG G +I Q++ E +K ++ ++T +E + P ++ +S R +R+A+ SG Sbjct: 278 LEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDNPSIIDKS--RIRRIAKGSG 406
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11 Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = 2 Query: 107 RILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIME--ALIEALTPEERE--KPHLLAESPVRTKRVAQESGK 454 R+LGMGD F++K HEV+P + ELL+K+ +F +Q + + +MG + + +PG + RE E+ KI +++++T EE + P L+ +S R R+A+ SG+ Sbjct: 293 RLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDS--RIMRIARGSGR 410 The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bpback to top |