CX287272

Overview
NameCX287272
Unique NameCX287272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.141e-11
Identity = 42/129 (32.56%), Postives = 75/129 (58.14%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSA-NFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITP--AQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP +P R+A RILGM D++S +E   E +     ++L KK+    +F+ NDFL Q + + ++G ++          +++   + +   + +LK +EA+I ++TP+ER KP ++  S  R +R+A  SG
Sbjct:  282 LEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSG 408          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.490e-11
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   89 PYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIP--GM-GKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457
            P     R+LGMGD+ + VE+A+EV+  +D    ++K+M   F  ND   Q   + +MG + + +  +P  G+ G IT    +  +  LK  + +++++T  ER+ P L+  S  R  RVA  SGK+
Sbjct:  281 PDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAAERDDPKLIGSS--RIARVAHGSGKS 402          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPH-EDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQV-REAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LEP  P R   R+LG+GD+   +EK  E+    E  EE L++ +   F   D   Q   + +MG + + +  IPG+G   P +V    E  L+  + +++++T EE   P ++  S  R KR+A+ SG
Sbjct:  281 LEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS--RIKRIARGSG 406          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 39/131 (29.77%), Postives = 72/131 (54.96%), Query Frame = 2
Query:   74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMS--ANFDFNDFLKQTRTVARMGSMSRAIGTIPGMG---KITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451
            LE   P R   RILGMGD+ S +EK   +  +E  ++ ++++MS  A     D  KQ   + +MG +++ +  +PG G   +I   Q++  E  +K    ++ ++T +E + P ++ +S  R +R+A+ SG
Sbjct:  278 LEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDNPSIIDKS--RIRRIAKGSG 406          
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  107 RILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIME--ALIEALTPEERE--KPHLLAESPVRTKRVAQESGK 454
            R+LGMGD   F++K HEV+P +   ELL+K+   +F      +Q + + +MG + +    +PG       + RE E+  KI     +++++T EE +   P L+ +S  R  R+A+ SG+
Sbjct:  293 RLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDS--RIMRIARGSGR 410          
The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SRP54_BUCAI1.141e-1132.56Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_UNCMA1.490e-1132.54Signal recognition 54 kDa protein OS=Uncultured me... [more]
SRP54_PYRAB3.319e-1132.03Signal recognition 54 kDa protein OS=Pyrococcus ab... [more]
SRP54_SULTO5.662e-1129.77Signal recognition 54 kDa protein OS=Sulfolobus to... [more]
SR542_SOLLC9.657e-1131.67Signal recognition particle 54 kDa protein 2 OS=So... [more]

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Properties
Property NameValue
Genbank descriptionC01006F11SK Veg1 Citrus clementina cDNA clone C01006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bp
AGACATGCTCATGGCGTATATATTTTTAGATGGTCTACATGATATGTGAA
AATTGAAGCTAACCTGGTTCTTCCTTGAACCTTGCTACCCATATCGCATG
GCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTCGTAGAGAAGGC
ACACGAAGTTATGCCGCACGAGGATGCTGAAGAACTGCTGAAGAAGATAA
TGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTT
GCACGTATGGGTTCGATGAGTCGTGCTATAGGAACGATCCCTGGAATGGG
GAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGACGAGTTTAAAAATAA
TGGAAGCACTGATCGAAGCACTGACGCCTGAGGAAAGGGAGAAACCACAT
CTGTTGGCTGAATCTCCTGTCAGAACAAAAAGAGTTGCTCAAGAGTCTGG
GAAAACAGAACA
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