CX287277

Overview
NameCX287277
Unique NameCX287277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:16..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546
            +++ETLSYLPPL+D  + K++ Y+L  G+IP +EF            S P      YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SF
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN---------EVSEPTEL---YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSF 101          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  232 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 534
            KFETLSYLP L+ + + ++++Y++  GW P +E            H+ P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQ 106          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 38/106 (35.85%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546
            +KFET SYLPPL+D+ + +++ Y L +G+ P +EF            S  G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + F
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEF------------SFTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMF 100          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 528
            +KFET SYLP +  + + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.056e-16
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 534
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQ 113          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 534
            +KFET SYLP L  E + K++ Y++  GW P +E            H+ P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQ 106          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.013e-15
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 534
            +KFET SYLP ++   + K++ YL+  GW P +E            H+ P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.434e-15
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 534
            +K ET SYLP ++ + +  ++ Y++  GW P +E            HS P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  238 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546
            ET S+LP  + + +  +I Y++  GW P LE            H +P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  232 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546
            ++ET SYLPPL+ E +L++I Y+L +GW   LE            H  P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SF
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSF 107          
The following BLAST results are available for this feature:
BLAST of CX287277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_ANASP1.141e-1840.57Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_THIFE2.541e-1842.57Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAPA1.261e-1735.85Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI3.106e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_PSEHY4.056e-1638.24Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ALVHS1.180e-1540.20Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA2.013e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR3.434e-1540.20Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_HYDMR9.991e-1535.92Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_CHRVI8.458e-1436.19Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01006G06SK Veg1 Citrus clementina cDNA clone C01006G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287277 ID=CX287277; Name=CX287277; organism=Citrus clementina; type=EST; length=546bp
AGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGAC
CACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCG
CCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAG
ACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATG
CATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCAT
ACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTT
CTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATG
GGTGTACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACT
GGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTT
TTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCG
AATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTC
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