CX287277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.990e-55 Identity = 96/155 (61.94%), Postives = 122/155 (78.71%), Query Frame = 1 Query: 82 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV EV+KEYP + RIIGFDN RQVQ +SF Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSF 161
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 6.402e-54 Identity = 95/155 (61.29%), Postives = 124/155 (80.00%), Query Frame = 1 Query: 82 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SF Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSF 161
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 8.361e-54 Identity = 98/165 (59.39%), Postives = 126/165 (76.36%), Query Frame = 1 Query: 64 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 A A A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISF Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISF 165
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.059e-52 Identity = 103/182 (56.59%), Postives = 136/182 (74.73%), Query Frame = 1 Query: 25 MASSMIS-STTVATANRASLAQ---ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MASS+++ S+T A A A+ ++ +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISF Sbjct: 1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISF 181
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 3.513e-52 Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 1 Query: 166 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISF Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISF 128
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.804e-48 Identity = 89/155 (57.42%), Postives = 116/155 (74.84%), Query Frame = 1 Query: 82 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++F Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTF 159
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 5.432e-45 Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 M+VWPP GLKKFETLSYLPPL+ E LL E++YLL GWIP LEFE++ G+VYREH SPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISF Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISF 115
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.932e-42 Identity = 83/173 (47.98%), Postives = 113/173 (65.32%), Query Frame = 1 Query: 31 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISF 546 +S+++S V T AS A + + +++ + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE + PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SF Sbjct: 2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASF 173
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.252e-41 Identity = 73/100 (73.00%), Postives = 90/100 (90.00%), Query Frame = 1 Query: 247 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 +YLPPLS EALLK++ YL+RS W+PCLEF + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSF 99
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 255 HSP 2 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 399 HSP 3 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 686 HSP 4 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 829 HSP 5 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1117 HSP 6 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1261 HSP 7 Score: 133.265 bits (334), Expect = 7.615e-31 Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD YWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 542 HSP 8 Score: 130.954 bits (328), Expect = 3.779e-30 Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR + FD+ +QVQ ISF Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISF 973 The following BLAST results are available for this feature:
BLAST of CX287277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287277 ID=CX287277; Name=CX287277; organism=Citrus clementina; type=EST; length=546bpback to top |