CX287317

Overview
NameCX287317
Unique NameCX287317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     +LEK++  K IA  IK+EFDK Y P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   12 DMSEEMQQDAVDCAT---QALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     ++EK++  K IA  IK+EFDK Y P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   12 DMSEDMQQDAVDCAT---QAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     ++EK++  K IA  IK+EFDK Y P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   12 DMSEDMQQDAVDCAT---QAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     ++EK++  K IA  IK+EFDK Y P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   12 DMSEDMQQDAVDCAT---QAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     ++EK++  K IA  IK+EFDK Y P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   12 DMSEDMQQDAVDCAT---QAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A  CA     +LEK++  K IA  IK+EFD+ + P WHCIVG  FGSYVTH T  F+YF + ++ IL+F++
Sbjct:   14 DMSEEMQADAVDCAT---QALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 90          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_SCHPO (Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe GN=dlc2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.359e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   74 VLACDMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            + A DM   MQ  A   A     ++EKF+  K IA  IKREFDK + P WHCIVG  FGS+VTH +  F+YF +  +  L+F++
Sbjct:    4 IKAVDMSEKMQQEAIHAA---VQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFKS 84          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL2_SCHMA (Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFSSKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A   A    D  E    K +A  IK+EFD+ Y P WHCIVG  FGSYVTH T  F+YF +++   L+F++
Sbjct:   12 DMHEDMQETAVHTAAAALDKYE--IEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYLQERAFLLFKS 88          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_CANGA (Dynein light chain 1, cytoplasmic OS=Candida glabrata GN=DYN2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 41/86 (47.67%), Postives = 47/86 (54.65%), Query Frame = 2
Query:   65 QVKVLACDMPGFMQVHAFRCARTTYDSLEKFSSKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            QV V A DM   MQ   FR A       E    + IA  IK+E D  YG  WH IVG  FGSYVTH  G F+YF +  L +LVF+T
Sbjct:    3 QVIVKASDMGDEMQQEVFRIAEEAMR--EHTLEREIASVIKKEMDSRYGHTWHVIVGRSFGSYVTHEKGKFVYFYVGPLALLVFKT 86          
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_SCHMA (Dynein light chain OS=Schistosoma mansoni GN=DLC PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.863e-12
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2
Query:   86 DMPGFMQVHAFRCARTTYDSLEKFSSKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            DM   MQ  A   A    D  +    K IA NIK++FD+ Y P WHCIVG  FGSYVTH T  F+YF ++    L+F++
Sbjct:   12 DMSEEMQEDAIHIAAGAIDKHDL--EKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHNFIYFYLDDRAFLLFKS 88          
The following BLAST results are available for this feature:
BLAST of CX287317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DYL2_DROME4.299e-1451.25Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL2_RAT5.614e-1450.00Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE5.614e-1450.00Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN5.614e-1450.00Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN5.614e-1450.00Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_CHLRE1.633e-1348.75Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]
DYL1_SCHPO2.359e-1245.24Dynein light chain 1, cytoplasmic OS=Schizosacchar... [more]
DYL2_SCHMA5.255e-1245.57Probable dynein light chain OS=Schistosoma mansoni... [more]
DYL1_CANGA5.255e-1247.67Dynein light chain 1, cytoplasmic OS=Candida glabr... [more]
DYL1_SCHMA6.863e-1245.57Dynein light chain OS=Schistosoma mansoni GN=DLC P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008B12SK Veg1 Citrus clementina cDNA clone C01008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287317 ID=CX287317; Name=CX287317; organism=Citrus clementina; type=EST; length=405bp
GAAATCAGTGTCACACGTAGAAACCAATTTGGGAACAAACTTGGCTTCTG
TGATTTCATTTCTTCAAGTGAAGGTCTTGGCGTGTGATATGCCGGGATTC
ATGCAGGTTCATGCCTTTCGCTGTGCAAGAACCACTTATGACAGCTTGGA
GAAGTTCAGCTCCAAACACATTGCTTTTAACATTAAGAGGGAGTTCGATA
AAGTGTATGGTCCGGCTTGGCATTGCATCGTGGGTTCAGGTTTCGGATCG
TACGTGACTCATTCAACAGGTTGTTTCCTCTATTTTTCAATGGAGAAATT
GTACATTTTAGTGTTTCAAACTAAAGTTCAGAAAGCTCTAGACTCAAATT
AACTATAATATCTCCTACTATAGTTTATCGTCAAAAAAAAAAAAAAAAAA
AAAAA
back to top