CX287317

Overview
NameCX287317
Unique NameCX287317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_EMENI (Dynein light chain, cytoplasmic OS=Emericella nidulans GN=nudG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:   62 LQVKVLACDMPGFMQVHAFRCARTTYDSLEKFS-SKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQTK 325
            L+ ++ + DM   MQ  A   A    +++EK+   K IA  IKREFD   G  WHC+VG  FGS+VTH T  F+YF +    IL+F+T+
Sbjct:    9 LEPQIKSVDMSEDMQQEAVEVA---IEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFKTQ 94
[Close]
BLAST of CX287317 vs. ExPASy Swiss-Prot
Match: DYL1_DEBHA (Dynein light chain 1, cytoplasmic OS=Debaryomyces hansenii GN=DYN2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:   80 ACDMPGFMQVHAFRCARTTYDSLEKFSSKHIAFNIKREFDKVYGPAWHCIVGSGFGSYVTHSTGCFLYFSMEKLYILVFQT 322
            A D+P  MQ   F  +     + +    K IA  +K+E D++YG  WH IVG  FGSYVTH  G F YF + +L  L+F++
Sbjct:   12 ASDLPEEMQTRIFELSNEAVSNYK--IEKDIATYLKKELDQLYGATWHVIVGKSFGSYVTHEQGFFTYFYIGQLAFLIFKS 90
The following BLAST results are available for this feature:
BLAST of CX287317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DYL1_EMENI1.171e-1142.70Dynein light chain, cytoplasmic OS=Emericella nidu... [more]
DYL1_DEBHA3.406e-1140.74Dynein light chain 1, cytoplasmic OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC01008B12SK Veg1 Citrus clementina cDNA clone C01008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287317 ID=CX287317; Name=CX287317; organism=Citrus clementina; type=EST; length=405bp
GAAATCAGTGTCACACGTAGAAACCAATTTGGGAACAAACTTGGCTTCTG
TGATTTCATTTCTTCAAGTGAAGGTCTTGGCGTGTGATATGCCGGGATTC
ATGCAGGTTCATGCCTTTCGCTGTGCAAGAACCACTTATGACAGCTTGGA
GAAGTTCAGCTCCAAACACATTGCTTTTAACATTAAGAGGGAGTTCGATA
AAGTGTATGGTCCGGCTTGGCATTGCATCGTGGGTTCAGGTTTCGGATCG
TACGTGACTCATTCAACAGGTTGTTTCCTCTATTTTTCAATGGAGAAATT
GTACATTTTAGTGTTTCAAACTAAAGTTCAGAAAGCTCTAGACTCAAATT
AACTATAATATCTCCTACTATAGTTTATCGTCAAAAAAAAAAAAAAAAAA
AAAAA
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