CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:241..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.427e-34
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + APS+P +N T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D
Sbjct:   57 ELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPSLPRENFTAMLRLDHNRALSQIAAKTGKPVASIEKMFVWGNHSPTMYAD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.427e-34
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D
Sbjct:   57 ELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYAD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.427e-34
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D
Sbjct:   57 ELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYAD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.427e-34
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.088e-34
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D+AFPL++ +    D      G ++A+++G  PR +GMER D+++ N  I+  Q  AL Q AA   +VLVV NPANTNAL+    AP IPA+  T LTRLDHNRA+ Q++      V D++ V IWGNHSS+QYPD
Sbjct:   59 ELDDSAFPLLRDIEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRALNQVAADGVRVLVVGNPANTNALVAANNAPDIPAERFTALTRLDHNRAIAQLARHSGAAVKDIRRVAIWGNHSSTQYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.088e-34
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++ V A  D   A    ++A++VG  PR  GMERKD+++ N  I+ AQ  AL + A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+ ++ +I+WGNHS + YPD
Sbjct:   59 ELEDCAFPLLQEVTAHADPKTAFKDADVALLVGARPRGPGMERKDLLTVNAQIFTAQGRALNEVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAGKSGKAVAGIEKLIVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.088e-34
Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL DAAFPL+  +V T+D  EA  G N  ++VG  PRK GMERKD++  N  ++  Q  A+ + AA + +VLVV NP NTNALI    A  +P+     +TRLD NRA  Q++EK  V V++V N+ IWGNHSS+QYPD
Sbjct:   56 ELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAAKDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSTKLGKPVGGMEKLVVWGNHSPTMYPD 196          
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_RALEJ5.427e-3449.64Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_RALEH5.427e-3449.64Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_CUPTR5.427e-3449.64Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_BURPP5.427e-3449.64Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_RHOSR7.088e-3448.92Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_BORA17.088e-3450.36Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_AKKM87.088e-3450.36Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_XANOR9.258e-3449.64Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM9.258e-3449.64Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_STRMK9.258e-3450.36Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]

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Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
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