CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:241..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSAKLGKPVGGMEKLVVWGNHSPTMYPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 69/139 (49.64%), Postives = 97/139 (69.78%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++ +  T D   A   +NIA++VG  PR +GMERKD++  N +I++AQ  AL++ A  + KVLVV NPANTNA I  + APS+   + + + RLDHNRA+ Q++ K+   VS V+ +I+WGNHSS+QYPD
Sbjct:   56 ELDDCAFPLLRDITITDDPKTAFRDINIAMLVGARPRTKGMERKDLLEANGTIFRAQGKALDEVAGRDVKVLVVGNPANTNAYITMKNAPSLKPTSFSSMMRLDHNRAVFQLAVKVGQPVSSVRKMIVWGNHSSAQYPD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GV    D  +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q+++K   +V+D+K + IWGNHS++QYPD
Sbjct:   57 ELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDIKKMTIWGNHSATQYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 70/139 (50.36%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+VAT D   A   V +A++VG  PR +GMERKD++  N +I+  Q  AL  HAA + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D
Sbjct:   56 ELEDCAFPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAARDVKVLVVGNPANTNAWIAMKSAPDLDPKNFTAMLRLDHNRALSQIAAKTGKPVASIEKLAVWGNHSPTMYAD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.579e-33
Identity = 68/139 (48.92%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V + D   A    + A++VG  PR  GMERKD++  N +I+  Q  A+  HA+ + KVLVV NPANTNALI +  AP I  +  T + RLDHNR L Q++ KL+V + D+  + IWGNHS++QYPD
Sbjct:   56 ELDDCAFPLLAGMVCSDDPNVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSVQGKAINDHASRDIKVLVVGNPANTNALIAQRNAPDINPRQFTAMMRLDHNRGLSQLAAKLDVTLEDITKMTIWGNHSATQYPD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.579e-33
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD
Sbjct:   61 ELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPD 199          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.579e-33
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD
Sbjct:   61 ELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPD 199          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.579e-33
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            E+ D AFPL+ G+ A  D + A    ++A++VG  PR  GMERKD++  N  I+  Q  A++  A+ N KVLVV NPANTNA I  + APS+PAKN T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D
Sbjct:   59 EIDDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYAD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.694e-33
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            E+ D AFPL+ G+ A  D + A   V++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D
Sbjct:   59 EIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYAD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.694e-33
Identity = 68/139 (48.92%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFP +  V    DA     GV +A++VG  PR +GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IPA   + LTRLDHNRA+GQ++ K + +V D++ + +WGNHS++QYPD
Sbjct:   56 ELDDCAFPALDSVEIGDDADHIFDGVTLALLVGARPRSKGMERGDLLSANGAIFTAQGKALNRVAADDVRIGVTGNPANTNALIAMSNAPDIPASRFSALTRLDHNRAIGQLAAKTHARVGDIRKMTVWGNHSATQYPD 194          
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_STRM59.258e-3450.36Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_NITMU1.209e-3349.64Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_MYCPA1.209e-3349.64Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_CHRVO1.209e-3350.36Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_SACD21.579e-3348.92Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_CORGL1.579e-3346.76Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB1.579e-3346.76Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_AQUAR1.579e-3348.92Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_RALSO2.694e-3349.64Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_ARTAT2.694e-3348.92Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]

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Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
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