CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFT (Acetylornithine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=argD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFA 370
            GR GT+F   +  + PD+V+ AK L   + PIGA+L  P+V+EV+   +       HG T+ G+P++ AVA  AL+      I   V + +   + G++  S++   +  ++RG GL+LG   A
Sbjct:  234 GRTGTLFAYWQEEVVPDIVTLAKGLGGGF-PIGAMLAGPKVAEVMQFGA-------HGTTFGGNPMAAAVARVALRKLASVEIAANVQRQSVALRAGLEEISEAFGGVFTQVRGRGLMLGAVLA 349          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFA (Acetylornithine aminotransferase OS=Xylella fastidiosa GN=argD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFA 370
            GR GT+F   +  + PD+V+ AK L   + PIGA+L  P+V+EV+   +       HG T+ G+P++ AVA  AL+      I   V + +   + G++  S++   +  ++RG GL+LG   A
Sbjct:  234 GRTGTLFAYWQEEVVPDIVTLAKGLGGGF-PIGAMLAGPKVAEVMQFGA-------HGTTFGGNPMAAAVARVALRKLASVEIAANVQRQSVALRAGLEEISEAFGGVFTQVRGRGLMLGAVLA 349          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 39/124 (31.45%), Postives = 64/124 (51.61%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD 373
            FGR G  F  D Y I+PD+++ AKA+ S  +PIG   +  EV+E I           HG T+ G+P++C  A+  +++ +   +VE   ++   F   VK   +S     + G GL++G +  D
Sbjct:  220 FGRTGRWFAKDHYGIEPDMITMAKAMGSG-VPIGCCALKEEVAEKIQVG-------DHGSTFGGNPLACTAALATIEVIEREGLVENSARMGEYF---VKRLKES--FENVIGVGLMIGFDVGD 330          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_MOUSE (Ornithine aminotransferase, mitochondrial OS=Mus musculus GN=Oat PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    8 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            R G     D  +++PD+V   KALS    P+ A+L   E+         T+    HG TY G+P+ C +AI AL++ +E N+ E  +K+    +  +     S ++  +RG GL+
Sbjct:  271 RTGRWLAVDHENVRPDMVLLGKALSGGLYPVSAVLCDDEIML-------TIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKL-PSDVVTSVRGKGLL 377          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: DGDA_BURCE (2,2-dialkylglycine decarboxylase OS=Burkholderia cepacia GN=dgdA PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEP 394
            GR GTMF C +  + PD+++ +K L  A +P+ AI+ S  + E  H     LG   +  T+   P+  AV +  L + +   +V + N +  + + G+    +    IG++RG GL+LG E   ++   EP
Sbjct:  250 GRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY-TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEP 374          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_SULTO (Acetylornithine/acetyl-lysine aminotransferase OS=Sulfolobus tokodaii GN=argD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTE 364
            FGR G ++    Y I PDL++  KA+   + P+ A+ +   ++E +           HG TY G+P++ A    A K+ KE N+VEQ +     F+  ++   SD   + EIRG GL++G E
Sbjct:  213 FGRTGKVWAYQHYGIIPDLLTAGKAIGGGF-PVSALFLPDWIAEKLEEGD-------HGSTYGGNPMAMAAVTAASKVLKEDNVVEQASIKGEIFKKILREKLSDLKSVREIRGKGLMIGIE 326          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_OCEIH (Acetylornithine aminotransferase OS=Oceanobacillus iheyensis GN=argD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIRGTGLILGTEFADNKS 382
            GR G++F    Y I+PD+++ AK L S + PIGA+L    ++        +    +HG T+ G+PV+ A  I  LK       +E   +   +  + +K+  + SP+I +IRG G ++G E  +  S
Sbjct:  227 GRTGSLFAYQPYGIEPDVITVAKGLGSGF-PIGAMLAKQHIAA-------SFSPGTHGSTFGGNPVAAAAGIATLKEILSDGFLENCKEGQEELFNQLKSIKEISPLIKDIRGKGYLMGIEVMNQAS 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_BACHD (Acetylornithine aminotransferase OS=Bacillus halodurans GN=argD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 39/128 (30.47%), Postives = 67/128 (52.34%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR GT F   +Y + PD+++ AK L + + P+GA+L    + +   + S       HG T+ G+P++ A A   L    + N ++ V +   +   G+ +A S   I+ EIRG GL++G E  +  +P
Sbjct:  214 GRTGTAFAFQQYELTPDIITVAKGLGNGF-PVGAMLGKQHLIDAFSAGS-------HGSTFGGNPLAMAAAQAVLTEVFQPNFLQAVQEKGKQLLSGLNEALSGLEIVKEIRGNGLLVGIELQEEGAP 333          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_DICDI (Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 40/115 (34.78%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    8 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            R G M   D   IKPDLV   KA+S   +PI A+L   +V         T+    HG TY G P++ AVA+ AL + ++ N+ E   K+   F+  +    + P I  +RG GL+
Sbjct:  246 RTGRMLCSDWDGIKPDLVLLGKAISGGLLPISAVLGGKDVML-------TIKPGEHGSTYGGSPLASAVAMAALDVLRDENLAENAQKLGEHFRAQISNI-NHPAIQLVRGKGLL 352          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_BOVIN (Ornithine aminotransferase, mitochondrial OS=Bos taurus GN=OAT PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    8 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            R G     D  +++PD+V   KALS    P+ A+L   E+         T+    HG TY G+P+ C VAI AL++ +E N+ E   K+    ++ +     S ++  +RG GL+
Sbjct:  271 RTGRWLAIDHENVRPDIVLLGKALSGGLYPVSAVLCDDEIML-------TIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGIILRNELMKL-PSDVVTTVRGKGLL 377          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ARGD_XYLFT4.396e-1133.06Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_XYLFA4.396e-1133.06Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_ARCFU4.396e-1131.45Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
OAT_MOUSE5.741e-1130.43Ornithine aminotransferase, mitochondrial OS=Mus m... [more]
DGDA_BURCE5.741e-1129.772,2-dialkylglycine decarboxylase OS=Burkholderia c... [more]
ARGD_SULTO5.741e-1132.79Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_OCEIH5.741e-1130.71Acetylornithine aminotransferase OS=Oceanobacillus... [more]
ARGD_BACHD5.741e-1130.47Acetylornithine aminotransferase OS=Bacillus halod... [more]
OAT_DICDI7.498e-1134.78Probable ornithine aminotransferase OS=Dictyosteli... [more]
OAT_BOVIN7.498e-1131.30Ornithine aminotransferase, mitochondrial OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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