CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.980e-27
Identity = 51/76 (67.11%), Postives = 67/76 (88.16%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD+T++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+++QY GK+K  KVNTDE+P +A++YGIRSIPT+MIFK
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.377e-27
Identity = 50/80 (62.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  166 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 114          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.760e-27
Identity = 51/77 (66.23%), Postives = 68/77 (88.31%), Query Frame = 1
Query:  175 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            AVTDAT++  VL+S  PVLV+FWAPWCGPCRM+ P++DE+++QY  ++K  KVNTDE+PS+A++YGIRSIPT+MIFK
Sbjct:    6 AVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.523e-27
Identity = 51/78 (65.38%), Postives = 68/78 (87.18%), Query Frame = 1
Query:  172 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            P V+DA+++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+S+QY GK+K  K+NTDE+P+ A++YGIRSIPT+MIFK
Sbjct:    5 PQVSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.201e-24
Identity = 45/81 (55.56%), Postives = 66/81 (81.48%), Query Frame = 1
Query:  163 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            + V  VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++DE++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK
Sbjct:    1 MSVSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFK 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 44/81 (54.32%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  163 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            + V  VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++D ++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK
Sbjct:    1 MSVSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFK 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 47/76 (61.84%), Postives = 64/76 (84.21%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD +++  V++S   VLV+FWAPWCGPCRMI P+IDEL+++YV ++K  K+NTDE+PSI+  YGIRSIPT+M+FK
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.958e-23
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD++++  VL+S  PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+I + YGIRSIPT+M+FK
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.046e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  163 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 402
            + +  V D ++   V++S  PVLV+FWAPWCGPCRMI   IDE++  Y  KLK  KVNTD++P+IAT YGIRSIPTVMIF
Sbjct:    1 MSISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIF 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.917e-22
Identity = 44/76 (57.89%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VT+AT++S VL+S  PVLV F  PWCGPC+M+ P++DE++ +Y GK+K  KVNTDE+P +A++YG+RSIPT ++FK
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFK 81          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO1_ANASO1.980e-2767.11Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TRXM_CHLRE3.377e-2762.50Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO1_SYNE75.760e-2766.23Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_SYNY37.523e-2765.38Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORYE1.201e-2455.56Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU7.785e-2454.32Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_CYACA7.785e-2461.84Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_RICFE2.958e-2360.53Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO_GRIPA5.046e-2360.00Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_STRAU1.917e-2257.89Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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