CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.579e-22
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V D++++  VL+S  PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+  + YGIRSIPT+M+FK
Sbjct:    5 VMDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 43/76 (56.58%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD+++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YGIRSIPT+M+FK
Sbjct:    5 VTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD +++  VL S  PVLV+FWA WC PCRM+ PII+E+SK    K+K  K+N DE+P I ++YGIRSIPTVM+FK
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.616e-21
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD ++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YG+RSIPT+M+FK
Sbjct:    5 VTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 42/81 (51.85%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  163 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +EV   TDAT+ + V++S  PVL++FWAPWCGPCRMI PI+DE++ ++ GK+K  K+N DE+ +   + G+RSIPT+++FK
Sbjct:    1 MEVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFK 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            + + T+++ VL S   VLV+FWAPWCGPCRMI PI++E++K++   LK  +VNTDE+P++AT YGIRSIPT+M+FK
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFK 77          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.344e-20
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA+++  VL +  PVLV++WA WCGPC+MI P++DE+++ Y GKLK  K+N DE+     +YG+R IPT+M+FK
Sbjct:    8 VTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.344e-20
Identity = 37/80 (46.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  166 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            EV  + DA ++S+V++S  P+L++FWAPWCGPC+MI P++DEL+ ++ GK+K  K+N D++ +   ++G+RSIPT+++ K
Sbjct:    3 EVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.907e-20
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V ++ +QS VL S  PV+V+FWA WCGPC+MI P +DE++ +  G++K  KVN DE+P +A ++G+RSIPT+++FK
Sbjct:    5 VDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  139 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +C     A EV   T  +W+  VL S +PVLVEF+  WCGPCRM+H IIDE++  Y GKL CY +N D    +A  Y I+++P V++FK
Sbjct:   61 LCVRDSRAAEV---TQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFK 146          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_RICCN5.579e-2257.89Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_RICPR1.623e-2156.58Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RICBR2.769e-2159.21Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_RICTY3.616e-2155.26Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_PASMU1.052e-2051.85Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_CYAME1.052e-2057.89Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_PSEAE2.344e-2052.63Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_HAEIN2.344e-2046.25Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO1_CORNE8.907e-2051.32Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
TRXM3_ARATH1.163e-1947.19Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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