CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 399
            VTD +++  VL S  PVLV++WA WCGPC+MI P++DE++ +Y G++K  K+N DE+P+   RYGIR IPT+M+
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLML 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  181 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            TD  +Q+ +LDS   VLV+FWA WCGPC M+ P+I++L+  Y GK    K+N DE+P+IA +YGIRSIPT++I K
Sbjct:    8 TDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.592e-19
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDAT+ + V  S  PV+V+FWA WCGPCR I P ++ELSK+Y GK+K  KVN DE+P      G+R IP + +FK
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFK 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FK
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.848e-19
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V D+ +   VL S +PV+V+FWAPWCGPCR+I PI+D+L+ +Y G+L   KVNTD++   A++ GI+ IPT++IFK
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFK 82          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_THIRO1.519e-1952.70Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_CHLLT1.984e-1954.67Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_RHOSH2.592e-1953.95Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_SHIFL7.540e-1950.00Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY7.540e-1950.00Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI7.540e-1950.00Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI7.540e-1950.00Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL67.540e-1950.00Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO577.540e-1950.00Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO_CHLAA9.848e-1952.63Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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