CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.194e-18
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD +++  V  S  PVLV++WA WCGPC+M  P+ DE++ +Y G++K  K N DE+P+   RYG R IPT+M+F+
Sbjct:    7 VTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFR 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V+D ++++ VL S  PVLV+FWA WCGPC+MI PI++E++ +Y  +L+  K N DE+P+   +Y IR IPT+++FK
Sbjct:    8 VSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  181 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            TD  +Q+ +L+S    LV+FWA WCGPC M+ P+I+EL+  Y GK    K+N DE+P+ A +YGIRSIPT++I K
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.857e-17
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  229 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.857e-17
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  229 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.404e-17
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  181 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            TD  +Q+ VLD+ +PVLV+FWA WC PC+ I P+++ELS +Y GK+K  KV+       A +Y IR+IP +++FK
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  178 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFK
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFK 114          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  178 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFK
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFK 114          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  178 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFK
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFK 114          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  178 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFK
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFK 114          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_CHRVI2.194e-1848.68Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_THIFE2.865e-1848.68Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO2_CHLTE6.383e-1852.00Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_HELPY1.857e-1759.32Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ1.857e-1759.32Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO2_CORNE5.404e-1748.00Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO2_SHIFL9.217e-1747.44Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI9.217e-1747.44Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL69.217e-1747.44Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO579.217e-1747.44Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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