CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.575e-16
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.575e-16
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.575e-16
Identity = 32/76 (42.11%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TD  ++  +L+S   VLV+FWA WC PC+++ PI+++++K+Y  KL   K+N D++P+ A +Y IR IP +++FK
Sbjct:    8 LTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V+DA+++  VL +  P  V+FWA WCGPCR   P ++EL+     K+   K+N DE+P   ++YG+R IPT+MIFK
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 35/75 (46.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 402
            +TD  ++  VL+S S  LV+FWA WC PC+++ PI++E+SK+Y  K+   K+N +E+P+ A  Y IRSIPT+++F
Sbjct:    7 LTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLF 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 34/76 (44.74%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD T+++ VL S  PVLV+FWA WCGPCR I P ++ ++ ++ G+++  K+N D++P+ A +YG+ SIPT+ +++
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQ 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  175 AVTDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            A+  AT QS   + S   VL +FWAPWCGPC+MI P+++EL ++   KLK  K++ DE+   A +YG+ SIPT+++ K
Sbjct:    2 AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 87          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_STAA84.575e-1651.32Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA34.575e-1651.32Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_BUCBP4.575e-1642.11Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_RHORU1.019e-1546.05Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_BUCAI1.019e-1546.67Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO_STRCL1.738e-1544.74Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_STAES2.270e-1548.68Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ2.270e-1548.68Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_BACSU2.270e-1546.15Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_MYCTU3.873e-1543.42Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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