CX287430

Overview
NameCX287430
Unique NameCX287430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   63 ELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNLGFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            ++  L L+ NSL  +LP  I   +K+++LN+ NN+ SG +PSDL+ L  L  LDLS N+F G +   K    +   +++ N  +G +P  +R++    F+  +    L G IP
Sbjct:  469 QMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIP-NKLPSQMVGFNVSYNDLSGIIPEDLRSYPPSSFYPGNSKLSLPGRIP 580          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   48 IGRL-SELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL-GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            +GRL S L+ L L  N  +  +P ++ +   L++L++  N  +G+IP   +    LR LDLSGN  +G++ GF+   P L  L L +NL TG VP ++ +  +L   D S N  + GPIP
Sbjct:  154 LGRLGSSLQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDLSRNR-VTGPIP 270          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   51 GRLSELRELSLANNSLVDLLPPQI-VDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL--GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            G    L++LSLA+N L   +PP++ + CK L IL++  N FSG +PS  ++ + L+ L+L  N  SG+     +     + +L +A N  +G VP S+    NL+  D S N    G +P
Sbjct:  274 GSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNG-FTGNVP 392          

HSP 2 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   66 LRELSLANNSLV-DLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL--GF--LKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            L+ L+L NN L  D L   +     +  L V  N  SG++P  L++   LRVLDLS N F+GN+  GF  L+  P LE + +A N  +G VP  +   ++L+  D S N  L GPIP
Sbjct:  328 LQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNE-LTGPIP 443          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL-GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            LTG +  S+G LS+L++L L  N L   +P +++  + LE L +  N  +G IP+ LS+  +L  + LS N  SG +   L    NL  L L  N  +G +P  +   ++L + D + N  L G IP
Sbjct:  463 LTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTN-FLNGSIP 588          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL-GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQFFDFSGNSLLEGPIP 401
            LTG +  S+G LS+L++L L  N L   +P +++  + LE L +  N  +G IP+ LS+  +L  + LS N  SG +   L    NL  L L  N  +G +P  +   ++L + D + N  L G IP
Sbjct:  463 LTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTN-FLNGSIP 588          
BLAST of CX287430 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   24 LTGVLSPSIGRLSELRELSLANNSLVDLLPPQIVDCKKLEILNVQNNQFSGTIPSDLSSLIRLRVLDLSGNSFSGNL--GFLKYFPNLEHLSLAKNLFTGKVPTSIRTFRNLQF--FDFSGNSL 383
            LTG + P+I +L  LR L L+  +L   +P  I   K LE L +  N  SG+IPS LS+L ++  L+LS N  +G++   F  +   +  L L+ N  +G +P S+    N+ F   D S N L
Sbjct:  107 LTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKSL---GNIDFNRIDLSRNKL 227          
The following BLAST results are available for this feature:
BLAST of CX287430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
Y5020_ARATH4.974e-1133.63Probable inactive receptor kinase At5g10020 OS=Ara... [more]
TMM_ARATH4.974e-1136.67Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
BRL1_ARATH4.974e-1134.17Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
BRI1_SOLPE4.974e-1133.86Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
BRI1_SOLLC4.974e-1133.86Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
PGIP1_ARATH6.496e-1135.48Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC01009E01SK Veg1 Citrus clementina cDNA clone C01009E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287430 ID=CX287430; Name=CX287430; organism=Citrus clementina; type=EST; length=486bp
AGCTCGTGTTTGTGCCTAGAGAGCTTACTGGGGTTCTTTCCCCGTCAATC
GGACGGCTGTCAGAGCTCAGAGAGCTCTCTCTGGCTAACAACAGCCTCGT
TGACCTGCTGCCACCCCAAATCGTTGACTGCAAGAAACTTGAAATTCTTA
ACGTTCAAAATAATCAGTTTTCTGGCACAATCCCCTCCGATTTGTCTTCT
TTAATTCGTCTTCGTGTTCTCGATCTTTCTGGGAATAGTTTTTCGGGGAA
TTTGGGTTTCCTGAAATATTTTCCAAACTTGGAACATCTCTCTTTAGCTA
AAAATCTGTTCACCGGAAAAGTCCCAACTTCCATACGTACATTTCGCAAT
CTCCAATTCTTCGACTTCTCCGGAAACAGTCTCCTTGAAGGTCCAATACC
AGTGATGAGAAGGGTTGGACCCTCAGGGTTTCAATACCCAAAACGATACG
TTTTGGCTGAGACTACCACCAATGGAAGAAGCAATG
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