CX288489

Overview
NameCX288489
Unique NameCX288489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:134..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 6.859e-74
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR +F+DLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVFNAV
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 8.959e-74
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGNA WELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV
Sbjct:    8 HIGQAGIQVGNARWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 9.905e-73
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            H+GQAGIQVGNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVFN+V
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.690e-72
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            H+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGA KHVPR VF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVFN+V
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 2.882e-72
Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            H+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV+DEVRTGTYR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+FNAV
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 2.882e-72
Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            H+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV+DEVRTGTYR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+FNAV
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 8.385e-72
Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQ GIQVGNACW+L+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTV DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF+ F++V
Sbjct:    8 HIGQGGIQVGNACWDLFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVCDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFIGFHSV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 8.385e-72
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGNACWELYCLEHGIQPDGQ+P DKT G  DDAF+TFFS+TGAGKHVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQVPGDKTAGHHDDAFSTFFSQTGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.095e-71
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 402
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD TVG   DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAV 141          
BLAST of CX288489 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.868e-71
Identity = 124/133 (93.23%), Postives = 130/133 (97.74%), Query Frame = 1
Query:    1 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNA 399
            HIGQAGIQ GNACWELYCLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPRAV+VDLEPTV DEVRTGTYRQL+HPEQ+ISGKEDAANN+ARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVF+A
Sbjct:    8 HIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHA 140          
The following BLAST results are available for this feature:
BLAST of CX288489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA1_CHLRE6.859e-7495.52Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_ANEPH8.959e-7497.76Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA_OXYGR9.905e-7394.03Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_STYLE1.690e-7293.28Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_TOXGO2.882e-7292.54Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA2.882e-7292.54Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_EUPOC8.385e-7292.54Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA3_MAIZE8.385e-7294.03Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA3_ARATH1.095e-7194.03Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_PELFA1.868e-7193.23Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionC02001A04SK IF1 Citrus clementina cDNA clone C02001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288489 ID=CX288489; Name=CX288489; organism=Citrus clementina; type=EST; length=434bp
CATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTA
CTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGTGATAAGA
CAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGAAACAGGT
GCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGCCCACTGT
CATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCACCCTGAGC
AGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCGTGGCCAC
TATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCATCAGGAA
GCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTCAATGCTG
TTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCT
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