CX288491

Overview
NameCX288491
Unique NameCX288491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig619 contig Ccv1_Contig619:24..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_CANAL (Inorganic pyrophosphatase OS=Candida albicans GN=IPP1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.864e-18
Identity = 49/107 (45.79%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TLDY+V+ +   GK VSP+HDIPL   +   + N +VE+P+ ++AK+E++ ++   PI QD KKGKLR+    +P++    NYG FPQTWEDP+ ++ E + A GDN
Sbjct:   14 TLDYKVY-IEKDGKPVSPFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNQSHPETK-AKGDN 118          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_SCHPO (Inorganic pyrophosphatase OS=Schizosaccharomyces pombe GN=ppa1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.435e-18
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLG--DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TLDY+V+ V  +G  +S WHDIPL       + N VVEIP+ + AK+E+  +    PIKQD KKGKLR+    +P++   WNYG FPQT+EDP+  + E + A GD+
Sbjct:   14 TLDYQVY-VEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITKEATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPETK-AKGDS 118          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_PICPA (Inorganic pyrophosphatase OS=Pichia pastoris GN=IPP1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            TL+ RVF +   G+ VSP+HDIPL   +   V N VVE+P+ ++AK+E++ +E   PI QD KKGKLR+    +P++    NYG FPQTWEDP+  + E + A GDN
Sbjct:   13 TLENRVF-IEKDGQVVSPFHDIPLYADESKKVLNMVVEVPRWTNAKLEISKEEKLNPILQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVTHPETK-AKGDN 117          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_DROME (Inorganic pyrophosphatase OS=Drosophila melanogaster GN=Nurf-38 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  248 YRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPY-NINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            Y ++F N  G  +SP HDIPL   +   ++N VVE+P+ ++AKME++      PIKQDIKKGKLR+    +P+    WNYG  PQTWE+P        G  GDN
Sbjct:   65 YSLYFKNKCGNVISPMHDIPLYANEEKTIYNMVVEVPRWTNAKMEISLKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALPQTWENPDHIEPST-GCKGDN 167          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR2_SCHPO (Putative inorganic pyrophosphatase C3A12.02 OS=Schizosaccharomyces pombe GN=SPAC3A12.02 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPSFANSEVE 520
            T D+RV+   N+ K +S +HD+PL      FN V EIP+ + AK E++    + PIKQD+K GKLRY    +PY+   WNYG  PQTWEDP+  +S  +
Sbjct:   21 TPDFRVYCYKNN-KPISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTK 118          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_PLAF7 (Probable inorganic pyrophosphatase OS=Plasmodium falciparum (isolate 3D7) GN=PFC0710w PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.977e-16
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  257 FFVNNSGKK------VSPWHDIPLQLGDGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDP 496
            FF++   KK      +SPWH I L+  DG +N +VEI K +  K+E+   E +  IKQD KKGKLRYY  +I WNYG  PQT+E P
Sbjct:   93 FFISYFEKKDDNFVPISPWHHIDLKNDDGTYNMIVEITKYNYIKLEIQLREKFNVIKQDKKKGKLRYYHNSIYWNYGALPQTYEYP 178          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR_ENCCU (Inorganic pyrophosphatase OS=Encephalitozoon cuniculi GN=IPP1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  260 FVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPY-NINWNYGLFPQTWEDPSFANSEVEGAFGDN 538
            +V   GK VSP+HDIPL +     + + V EIP+  + K E+  +E + PIKQDIKKG  R+    +P     WNYG  PQTWE+P   +    GA GDN
Sbjct:   20 YVTQDGKIVSPFHDIPLYMSGNREIVSVVNEIPRFENGKFEINKEEAFNPIKQDIKKGWPRFVKNVFPMKGYLWNYGALPQTWENPHEVDRHT-GARGDN 118          
BLAST of CX288491 vs. ExPASy Swiss-Prot
Match: IPYR2_YEAST (Inorganic pyrophosphatase, mitochondrial OS=Saccharomyces cerevisiae GN=IPP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  239 TLDYRVFFVNNSGKKVSPWHDIPLQLGDG--VFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY----YPYN-INWNYGLFPQTWEDPS 499
            TL ++ +    +G+  S +HD+PL L +     N +VE+P+ ++ K E++ +  + PI QD K GKLR+    +PY+    NYG  PQTWEDP+
Sbjct:   44 TLGFKKYLTLLNGEVGSFFHDVPLDLNEHEKTVNMIVEVPRWTTGKFEISKELRFNPIVQDTKNGKLRFVNNIFPYHGYIHNYGAIPQTWEDPT 137          
The following BLAST results are available for this feature:
BLAST of CX288491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
IPYR_CANAL1.864e-1845.79Inorganic pyrophosphatase OS=Candida albicans GN=I... [more]
IPYR_SCHPO2.435e-1846.73Inorganic pyrophosphatase OS=Schizosaccharomyces p... [more]
IPYR_PICPA5.425e-1847.66Inorganic pyrophosphatase OS=Pichia pastoris GN=IP... [more]
IPYR_DROME5.425e-1845.19Inorganic pyrophosphatase OS=Drosophila melanogast... [more]
IPYR2_SCHPO1.578e-1745.45Putative inorganic pyrophosphatase C3A12.02 OS=Sch... [more]
IPYR_PLAF72.977e-1648.84Probable inorganic pyrophosphatase OS=Plasmodium f... [more]
IPYR_ENCCU2.786e-1444.00Inorganic pyrophosphatase OS=Encephalitozoon cunic... [more]
IPYR2_YEAST9.909e-1238.30Inorganic pyrophosphatase, mitochondrial OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC02001A06SK IF1 Citrus clementina cDNA clone C02001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288491 ID=CX288491; Name=CX288491; organism=Citrus clementina; type=EST; length=539bp
CACTTTCTCACTCACTCCCACTCACAGTCGCCAGTCAGCAGCCATGGCAG
CCGCAAAAGCGATAAGCCAAACCACTTCTTGCTTGCTGTCCAAAACACCC
TTTGCTCTGAAACACAAATCCCACATCACAAATCTTTGCTTTGGTACCAA
AGGAGTTGCTTTTCCGTCAAAGAGGCTGTTTTCATGTAGGGCTATTTATA
ATCCTCAGGTTCAAATCACAGAGGAGTGCCAGCCTGAAACTCTAGATTAC
AGAGTCTTTTTCGTCAACAATTCTGGCAAAAAGGTTTCTCCCTGGCATGA
CATACCGCTGCAATTGGGTGACGGTGTTTTCAACTTTGTTGTTGAAATAC
CCAAAGAATCAAGTGCAAAGATGGAGGTTGCTACTGATGAGCTATACACC
CCTATTAAACAGGATATAAAGAAGGGGAAGCTTCGATACTACCCATACAA
CATAAATTGGAATTATGGATTGTTTCCACAAACATGGGAAGATCCATCTT
TTGCAAACTCTGAAGTTGAAGGGGCATTTGGGGATAATG
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