CX288495

Overview
NameCX288495
Unique NameCX288495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  104 RKRQMECLVPLIRNRKAFVEKG---QNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            RK+ + C+  L R  + F++     +   +E E         +DSL  L      +L   ++  L  +V  AGTDT+++T EWAM  L  + E   K   EI   +G++G V+E D+  +PYL A+VKETLR HP    L+   +  D ++ G+ +P    V
Sbjct:  242 RKKAVLCIEKLFRVFQEFIDARLAKRFSRTEKEPKEASSIDMLDSLLDLTQQNEAELTMNDLKHLLLDVFVAGTDTNSSTMEWAMTELFRSTEKMVKAQSEIRQVIGQNGFVQESDIPSLPYLQAIVKETLRLHPAAP-LIPRKSESDVQIMGFLVPKNTQV 402          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 54/175 (30.86%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   44 DFLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            DF+PIL P  R  ++  ++++ R++         +K FV++ +   S     S      +D +   E  G  ++ E  ++ +   +  A  +T+  + EW +  LV + EIQ KL  E+   +G    V E D+ K+PYL AVVKETLR       L+ H  + D +L GY IPA
Sbjct:  226 DFIPILRPFLRGYLKICQDVKDRRIALF------KKYFVDERKQIASSKPTGSEGLKCAIDHILEAEQKG--EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQSKLRNELDTVLGPGVQVTEPDLHKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLAGYDIPA 392          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 2
Query:   38 LPDFLPILTPL----FRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESEMVSPIGAAYVDSLFGL-EPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            + D+LPILT L      + MR++  +  +  +   P+I  R     +G+    E          ++D    + +  G   L   EI     E++ A  D  +   EWAM  +V   EI  K  +EI   VGK+ LV+E D+ K+ Y+ A+++E  R HP   F L H A+ D  + GY IP G  V
Sbjct:  254 ISDYLPILTGLDLNGHEKIMRDSSAIMDKYHD---PIIDARIKMWREGKKTQIED---------FLDIFISIKDEEGNPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMVNKPEILRKAMEEIDRVVGKERLVQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDATVAGYHIPKGSQV 427          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C93A3_SOYBN (Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  221 VDSLFGL--EPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            +D LF +  + +   +L ++ I     +++ AGTDTSA T EWAM  L+ N  + EK  +E+ A VGK  +V+E D+  +PYL  +V+ETLR HP G  L   ++ +   + GY IPA
Sbjct:  276 LDVLFDISEDESSEIKLNKENIKAFILDILIAGTDTSAVTMEWAMAELINNPGVLEKARQEMDAVVGKSRIVEESDIANLPYLQGIVRETLRLHPAGPLLFRESS-RRAVVCGYDIPA 392          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 2
Query:   47 FLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            ++ +LT +  R  R   EL       +   + +RKA    G +   + ++V  +     DS  G+       L    +  +  ++ S GTDT+A T EWAM  L+ + ++ EK  +E+   VGK   V+EED+ ++ YL  ++KETLR HP    L+   + +D  + GY IPA   V
Sbjct:  226 WVDVLTGMDARLKRNHGELDAFVDHVIDDHLLSRKA---NGSDGVEQKDLVDVLLHLQKDSSLGVH------LNRNNLKAVILDMFSGGTDTTAVTLEWAMAELIKHPDVMEKAQQEVRRVVGKKAKVEEEDLHQLHYLKLIIKETLRLHPVAPLLVPRESTRDVVIRGYHIPAKTRV 394          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 49/175 (28.00%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 DFLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            DF+PIL P  +  ++  KE++ R+++        +  FV++ +   S     +      +D +   +  G  ++ +  ++ +   +  A  +T+  + EW +  LV +Q+IQ K+ +EI   +G    V E D++K+PYL AV+KETLR       L+ H  + D +L G+ IPA
Sbjct:  225 DFIPILRPFLKGYLKLCKEVKDRRLQLF------KDYFVDERKKLGSTKSTTNEGLKCAIDHILDAQQKG--EINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQKIQNKVREEIDRVLGPGHQVTEPDLQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLSGFDIPA 391          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C71A6_NEPRA (Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa GN=CYP71A6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  206 IGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVIS---AGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAGVHV 580
            +G  +VD L   +          + +T+ + ++    AGTDT+ T  EWA+  L+ N    + L KE+    G  G ++E D+EKMPYL AV+KE+LR H P   L+   + +DT++ GY + +G  V
Sbjct:  274 VGLDFVDLLLQFQRENERSSSPVDDLTIKAVILDMFLAGTDTTVTALEWALSELIKNPRAMKILQKEVRGVAGSKGEIEESDLEKMPYLKAVMKESLRLHAPVPLLVPRESTRDTKVLGYDVASGTRV 401          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C83B1_ARATH (Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   47 FLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESE-MVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            FL  LT L  R  +  KEL     E L   +   +        P  E+E  +  +   Y D  F ++ T       + +  +  +++  GTDT+A    WAM +L+   E  +K   E+ + +G  G V EED+  +PYL AV+KE+LR  P    LL    I D ++GGY IPA
Sbjct:  225 FLDNLTGLSARLKKAFKELDTYLQELLDETLDPNR--------PKQETESFIDLLMQIYKDQPFSIKFT------HENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRSVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPA 385          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: CP1A1_MOUSE (Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 47/176 (26.70%), Postives = 83/176 (47.16%), Query Frame = 2
Query:   44 DFLPILTPLFRRQMREAKELRKRQMECLVPLIRNRKAFVEKGQNPNSESEMVSPIGAAYVDSLFGLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPAG 571
            DF+P+L  L    +   K+L  +    +  LI+      EKG   +    ++       +D           QL + +++T+  ++  AG DT  T   W++ +LV N  +Q K+ +E+   +G+D   +  D  ++PYL+A + ET R      F + H+  +DT L G+ IP G
Sbjct:  239 DFIPVLRYLPNSSLDAFKDLNDKFYSFMKKLIKEHYRTFEKGHIRDITDSLIEHCQDRKLDE------NANVQLSDDKVITIVLDLFGAGFDTVTTAISWSLMYLVTNPRVQRKIQEELDTVIGRDRQPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTSLNGFYIPKG 408          
BLAST of CX288495 vs. ExPASy Swiss-Prot
Match: C93A2_SOYBN (Cytochrome P450 93A2 OS=Glycine max GN=CYP93A2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  236 GLEPTGREQLGEQEIVTLCSEVISAGTDTSATTAEWAMHHLVLNQEIQEKLYKEIVAAVGKDGLVKEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYSIPA 568
            G + +   +L ++ I     ++  AGTDTSA T EWAM  L+ N  + EK  +EI A VG   +++E D+  +PYL A+V+ETLR HP G  ++  ++ K   + GY IPA
Sbjct:  275 GEDDSSEIKLTKENIKAFIMDIFVAGTDTSAATMEWAMAELINNPCVLEKARQEIDAVVGNSRIIEESDIVNLPYLQAIVRETLRIHPGGPLIVRESS-KSVVVCGYEIPA 384          
The following BLAST results are available for this feature:
BLAST of CX288495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
C76C3_ARATH7.444e-1732.10Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_ARATH9.722e-1730.86Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
C79B1_SINAL9.722e-1730.65Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
C93A3_SOYBN1.270e-1638.98Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=... [more]
C71A1_PERAE1.270e-1630.34Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
TCMO_CICAR1.658e-1628.00Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
C71A6_NEPRA1.658e-1634.38Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa... [more]
C83B1_ARATH2.166e-1632.00Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CY... [more]
CP1A1_MOUSE2.829e-1626.70Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1... [more]
C93A2_SOYBN2.829e-1639.64Cytochrome P450 93A2 OS=Glycine max GN=CYP93A2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02001A10SK IF1 Citrus clementina cDNA clone C02001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288495 ID=CX288495; Name=CX288495; organism=Citrus clementina; type=EST; length=594bp
CATACTAAAAGATGTAATGCTGATAACATCACCACAGCTTCCGGATTTCT
TGCCGATTCTCACTCCATTATTTCGCAGGCAAATGAGAGAAGCAAAGGAG
TTGAGGAAGAGACAAATGGAGTGCTTGGTTCCACTGATAAGGAACAGAAA
AGCTTTTGTAGAGAAAGGCCAAAACCCTAACTCAGAGTCAGAGATGGTGA
GTCCAATTGGTGCTGCTTATGTGGATTCATTGTTTGGGCTGGAGCCAACG
GGGAGAGAGCAGCTGGGGGAACAAGAGATTGTGACATTGTGTTCTGAAGT
GATCAGTGCAGGCACTGACACTAGCGCAACAACGGCCGAATGGGCAATGC
ATCACTTGGTGCTAAACCAGGAGATTCAAGAAAAGTTGTATAAAGAAATT
GTAGCTGCTGTGGGGAAAGATGGGCTTGTTAAAGAAGAAGATGTCGAGAA
AATGCCTTATCTCGATGCTGTCGTGAAGGAAACTCTCCGGCGGCACCCTC
CTGGCCATTTTCTGCTGTCTCACGCTGCCATAAAGGATACTGAGCTTGGC
GGGTACTCCATCCCGGCAGGTGTTCACGTGGAATTCTACACTGC
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