CX288509

Overview
NameCX288509
Unique NameCX288509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:521..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryctolagus cuniculus GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.225e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_PIG (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (Fragment) OS=Sus scrofa GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.225e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  235 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 421          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Mus musculus GN=Ppp2r2a PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.225e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Macaca fascicularis GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.225e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Homo sapiens GN=PPP2R2A PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.225e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABG_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Oryctolagus cuniculus GN=PPP2R2C PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F     +    TLEAS+   + +                  RRV  G      D + ++ DF+ K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF--DRNTKRDVTLEASRESSKPRAVLKP-------------RRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABG_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Macaca fascicularis GN=PPP2R2C PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F     +    TLEAS+   + +                  RRV  G      D + ++ DF+ K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF--DRNTKRDVTLEASRESSKPRAVLKP-------------RRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABG_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Homo sapiens GN=PPP2R2C PE=2 SV=4)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F     +    TLEAS+   + +                  RRV  G      D + ++ DF+ K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF--DRNTKRDVTLEASRESSKPRAVLKP-------------RRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_CARAU (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Carassius auratus GN=ppp2r2b PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 99/201 (49.25%), Postives = 135/201 (67.16%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+T+K+WDINM+S P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 +   +  D  ++D    + DFS K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRTSALCDNHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYLMTRDYLTVKVWDINMESKPLETYQVHDYLRSKLCSLYENDCIFDKFECVWNGTDSVLMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCIGGKRRKDEISVD----SLDFSKKILHTAWHPNENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus GN=Ppp2r2a PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F     +    TLEAS+ N   R V                 R+V  +     D  + ++ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct:  256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442          
The following BLAST results are available for this feature:
BLAST of CX288509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABA_RABIT3.225e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_PIG3.225e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_MOUSE3.225e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_MACFA3.225e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_HUMAN3.225e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_RABIT4.212e-5048.02Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_MACFA4.212e-5048.02Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_HUMAN4.212e-5048.02Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_CARAU4.212e-5049.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_RAT4.212e-5050.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC02001C01SK IF1 Citrus clementina cDNA clone C02001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288509 ID=CX288509; Name=CX288509; organism=Citrus clementina; type=EST; length=617bp
ATGCGGCAGTCAGCTTTATGCGATACTCATAGCAAATTGTTTGAGGAACA
GGAAGCTCCCGGTACGAGGTCTTTTTTCACGGAGATAATTGCCTCCATTT
CAGATATCAAGTTTGCCAGGAATGGAAGACATATATTAAGTCGTGACTAC
ATGACCCTCAAGTTATGGGACATAAATATGGATTCTGGTCCTGTTGCAAC
TTTCCAGGTTCATGAACATCTAAGACCTAAGTTGTGTGATTTATATGAAA
ATGATTCTATCTTTGACAAATTTGAGTGTTGTCTGAGCGGAGATGGGGGT
CGGGTGGCTACTGGTTCCTACAGCAATCTGTTTCGCGTGTTTGGTTGTTC
TGAGGGTAGTGCAGAATCAACAACACTGGAAGCCAGCAAAAATCCCATGA
GGAGACAAGTTCAAACCCCGTCAAGGCCTTCTAGACCTCTAGGAAGTCTT
TCTGGTGTTGTGAGGCGAGTAAAAGGAGCAGATAACTCTGCACTTGATGC
AAATGGAAATGCTTTTGATTTCTCCATGAAGTTGTTGCACTTAGCTTGGC
ATCCATCAGAAAACTCAATTGCATGCGCTGCTTCAAACAGCCTTTACATG
TATTATGCATAAAGTTG
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