CX288509

Overview
NameCX288509
Unique NameCX288509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:521..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (Fragment) OS=Oryctolagus cuniculus GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  222 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 408          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_PONAB (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Pongo abelii GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Mus musculus GN=Ppp2r2b PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Macaca fascicularis GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Homo sapiens GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_BOVIN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Bos taurus GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Rattus norvegicus GN=Ppp2r2b PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 9.382e-50
Identity = 99/201 (49.25%), Postives = 133/201 (66.17%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T K+WD+NM++ PV T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABG_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Rattus norvegicus GN=Ppp2r2c PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.600e-49
Identity = 96/202 (47.52%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYE+D IFDKFEC  +G    + TG+Y+N FR+F     +    TLEAS+   + +                  RRV  G      D + ++ DF+ K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMF--DRNTKRDVTLEASRESSKPRAVLKP-------------RRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABG_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Mus musculus GN=Ppp2r2c PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.600e-49
Identity = 96/202 (47.52%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYE+D IFDKFEC  +G    + TG+Y+N FR+F     +    TLEAS+   + +                  RRV  G      D + ++ DF+ K+LH AWHP+EN IA AA+N+LY++
Sbjct:  252 MRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMF--DRNTKRDVTLEASRESSKPRAVLKP-------------RRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABD_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Mus musculus GN=Ppp2r2d PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.600e-49
Identity = 96/202 (47.52%), Postives = 134/202 (66.34%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F     +    TLEAS+   + +                  R+V  G      + + ++ DF+ K+LH AWHP E+ IA AA+N+LY++
Sbjct:  262 MRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDVTLEASRENSKPRASLKP-------------RKVCTGGKRKKDEISVDSLDFNKKILHTAWHPMESIIAVAATNNLYIF 448          
The following BLAST results are available for this feature:
BLAST of CX288509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABB_RABIT7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_PONAB7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_MOUSE7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_MACFA7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_HUMAN7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_BOVIN7.184e-5048.76Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_RAT9.382e-5049.25Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_RAT1.600e-4947.52Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_MOUSE1.600e-4947.52Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABD_MOUSE1.600e-4947.52Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC02001C01SK IF1 Citrus clementina cDNA clone C02001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288509 ID=CX288509; Name=CX288509; organism=Citrus clementina; type=EST; length=617bp
ATGCGGCAGTCAGCTTTATGCGATACTCATAGCAAATTGTTTGAGGAACA
GGAAGCTCCCGGTACGAGGTCTTTTTTCACGGAGATAATTGCCTCCATTT
CAGATATCAAGTTTGCCAGGAATGGAAGACATATATTAAGTCGTGACTAC
ATGACCCTCAAGTTATGGGACATAAATATGGATTCTGGTCCTGTTGCAAC
TTTCCAGGTTCATGAACATCTAAGACCTAAGTTGTGTGATTTATATGAAA
ATGATTCTATCTTTGACAAATTTGAGTGTTGTCTGAGCGGAGATGGGGGT
CGGGTGGCTACTGGTTCCTACAGCAATCTGTTTCGCGTGTTTGGTTGTTC
TGAGGGTAGTGCAGAATCAACAACACTGGAAGCCAGCAAAAATCCCATGA
GGAGACAAGTTCAAACCCCGTCAAGGCCTTCTAGACCTCTAGGAAGTCTT
TCTGGTGTTGTGAGGCGAGTAAAAGGAGCAGATAACTCTGCACTTGATGC
AAATGGAAATGCTTTTGATTTCTCCATGAAGTTGTTGCACTTAGCTTGGC
ATCCATCAGAAAACTCAATTGCATGCGCTGCTTCAAACAGCCTTTACATG
TATTATGCATAAAGTTG
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