CX288509

Overview
NameCX288509
Unique NameCX288509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:521..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABD_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Rattus norvegicus GN=Ppp2r2d PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.656e-49
Identity = 95/202 (47.03%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SALCD H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T  VHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F     +    TLEAS+   + +                  R+V  G      + + ++ DF+ K+LH AWHP E+ IA AA+N+LY++
Sbjct:  262 MRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHHVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDVTLEASRENSKPRASLKP-------------RKVCSGGKRKKDEISVDSLDFNKKILHTAWHPMESIIAVAATNNLYIF 448          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_DROME (Protein phosphatase PP2A 55 kDa regulatory subunit OS=Drosophila melanogaster GN=tws PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.037e-48
Identity = 95/202 (47.03%), Postives = 135/202 (66.83%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR +ALCD HSK FEE E P  RSFF+EII+SISD+K + +GR+++SRDY+++K+WD++M++ P+ T+ VHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FRVF     S +  TLEAS++ ++ +                  R+V  G      + + +  DF+ K+LH AWHP EN IA AA+N+L+++
Sbjct:  309 MRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVF--DRNSKKDVTLEASRDIIKPKTVLKP-------------RKVCTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIF 495          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_SCHPO (Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.163e-46
Identity = 94/206 (45.63%), Postives = 132/206 (64.08%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE---GSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGA--DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            +RQSALCD   KLFE+QE   ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+  PV T  +H+ LR KLCDLYEND IFDKFEC  SGD   V +GSYSN F ++       G      L+A K   R +                  R    A   ++++  + +  D++ K+LH +WHP E+S+A AA+N+L+++
Sbjct:  255 LRQSALCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADKAAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILHASWHPFEDSVAIAATNNLFVF 460          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABB_PIG (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Sus scrofa GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 85/201 (42.29%), Postives = 120/201 (59.70%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 603
            MR SA         +E E P  RSF  ++ +SISD+KF++    I++RDY+T+K+WD+NM++ P+ T+QVH +LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F     +    TLEAS+   + +                 V   +  D  ++D    + DFS K+LH AWHPSEN IA AA+N+LY++
Sbjct:  252 MRASACVTGTPNFLKEPEDPSNRSFSLKLSSSISDVKFSQQWEDIMTRDYLTVKVWDLNMENRPIETYQVHNYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF--DRNTKRDVTLEASRENSKPRA--------ILKPRKVCVGGKRRKDEISVD----SLDFSKKILHTAWHPSENIIAVAATNNLYIF 438          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_CANTR (Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.244e-35
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 342
            MR ++LCD+H+K+FEE   P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T  VHEHLR +LCD YEND+IFDKFE    GD   V TGSY+N F ++
Sbjct:  247 MRSNSLCDSHAKIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKTIDVHEHLRERLCDTYENDAIFDKFEVQFGGDNKSVMTGSYNNQFVIY 360          
BLAST of CX288509 vs. ExPASy Swiss-Prot
Match: 2ABA_YEAST (Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae GN=CDC55 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.608e-33
Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = 1
Query:    1 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 342
            MRQ++LCD  +K FEE   P   +FFTEI +SISDIKF+ NGR+I SRDY+T+K+WD+NMD+ P+ T  +HE L+ +L D YEND+IFDKFE   SGD   V TGSY+N F ++
Sbjct:  263 MRQNSLCDNKTKTFEEYLDPINHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLKTINIHEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSYNNNFMIY 376          
The following BLAST results are available for this feature:
BLAST of CX288509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABD_RAT4.656e-4947.03Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_DROME1.037e-4847.03Protein phosphatase PP2A 55 kDa regulatory subunit... [more]
2ABA_SCHPO2.163e-4645.63Protein phosphatase PP2A regulatory subunit B OS=S... [more]
2ABB_PIG1.961e-3942.29Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_CANTR2.244e-3557.02Protein phosphatase PP2A regulatory subunit B OS=C... [more]
2ABA_YEAST1.608e-3357.02Protein phosphatase PP2A regulatory subunit B OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC02001C01SK IF1 Citrus clementina cDNA clone C02001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288509 ID=CX288509; Name=CX288509; organism=Citrus clementina; type=EST; length=617bp
ATGCGGCAGTCAGCTTTATGCGATACTCATAGCAAATTGTTTGAGGAACA
GGAAGCTCCCGGTACGAGGTCTTTTTTCACGGAGATAATTGCCTCCATTT
CAGATATCAAGTTTGCCAGGAATGGAAGACATATATTAAGTCGTGACTAC
ATGACCCTCAAGTTATGGGACATAAATATGGATTCTGGTCCTGTTGCAAC
TTTCCAGGTTCATGAACATCTAAGACCTAAGTTGTGTGATTTATATGAAA
ATGATTCTATCTTTGACAAATTTGAGTGTTGTCTGAGCGGAGATGGGGGT
CGGGTGGCTACTGGTTCCTACAGCAATCTGTTTCGCGTGTTTGGTTGTTC
TGAGGGTAGTGCAGAATCAACAACACTGGAAGCCAGCAAAAATCCCATGA
GGAGACAAGTTCAAACCCCGTCAAGGCCTTCTAGACCTCTAGGAAGTCTT
TCTGGTGTTGTGAGGCGAGTAAAAGGAGCAGATAACTCTGCACTTGATGC
AAATGGAAATGCTTTTGATTTCTCCATGAAGTTGTTGCACTTAGCTTGGC
ATCCATCAGAAAACTCAATTGCATGCGCTGCTTCAAACAGCCTTTACATG
TATTATGCATAAAGTTG
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