CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_NITEC (Adenosylhomocysteinase OS=Nitrosomonas eutropha (strain C91) GN=ahcY PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGK-YEKKVYVLPK 214
            IKPQ D  +FP T   IIVLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+    GK Y+KKVYVLPK
Sbjct:  367 IKPQVDHVIFP-TGRRIIVLAQGRLVNLGCATGHPSFVMSSSFTNQVLAQMELWQ---NGKDYQKKVYVLPK 434          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCUA (Adenosylhomocysteinase OS=Mycobacterium ulcerans (strain Agy99) GN=ahcY PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+ GLE   G  R  IKPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPK
Sbjct:  365 IDMAGLER-SGATRTNIKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPK 448          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCMM (Adenosylhomocysteinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ahcY PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+ GLE   G  R  IKPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPK
Sbjct:  365 IDMAGLER-SGATRTNIKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPK 448          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RALME (Adenosylhomocysteinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ahcY PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW E+ +GKY   VYVLPK
Sbjct:  346 IDIASVEKYEWDE---IKPQVDHVKFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWAERDSGKYPVGVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RALEJ (Adenosylhomocysteinase OS=Ralstonia eutropha (strain JMP134) GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPK
Sbjct:  346 IDIASIEKYEWDE---IKPQVDHVKFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_POLSQ (Adenosylhomocysteinase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSG----IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV G+E Y   K   IKPQ D  +FP  N      II+LA+GRL+NLGC TGHPS+VMS SF NQVIAQ+ELW    T KY   VY LPK
Sbjct:  350 IDVAGIEKY---KWEEIKPQVDHVIFPAANGKPEKRIIILAKGRLVNLGCGTGHPSYVMSSSFANQVIAQIELWNAVGTDKYPIGVYTLPK 437          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCPA (Adenosylhomocysteinase OS=Mycobacterium paratuberculosis GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -1
Query:    2 GVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 232
            G  +  I+PQ D W FP+T   IIVL+EGRL+NLG ATGHPSFVMS SF+NQVIAQ+ELW +    +Y+ +VY LPK
Sbjct:  378 GAIKTNIRPQVDLWTFPDTGKSIIVLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQIELWTKND--EYDNEVYRLPK 452          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DESVM (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LET PG   + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL    +    E+KVY+LPK
Sbjct:  353 IDMHYLETTPGCTCLNIKPQVDKWTLKSGRS-IIVLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIEL---ATNPDLERKVYILPK 435          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RALEH (Adenosylhomocysteinase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D   FP+    +I+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPK
Sbjct:  346 IDIASIEKYEWDE---IKPQVDHVKFPDGKK-LIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CUPTR (Adenosylhomocysteinase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ahcY PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D   FP+    +I+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPK
Sbjct:  346 IDIASIEKYEWDE---IKPQVDHVKFPDGKK-LIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPK 428          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_NITEC1.041e-2072.22Adenosylhomocysteinase OS=Nitrosomonas eutropha (s... [more]
SAHH_MYCUA1.041e-2058.62Adenosylhomocysteinase OS=Mycobacterium ulcerans (... [more]
SAHH_MYCMM1.041e-2058.62Adenosylhomocysteinase OS=Mycobacterium marinum (s... [more]
SAHH_RALME1.360e-2057.47Adenosylhomocysteinase OS=Ralstonia metallidurans ... [more]
SAHH_RALEJ1.776e-2056.32Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_POLSQ1.776e-2057.14Adenosylhomocysteinase OS=Polynucleobacter sp. (st... [more]
SAHH_MYCPA1.776e-2061.04Adenosylhomocysteinase OS=Mycobacterium paratuberc... [more]
SAHH_DESVM1.776e-2059.77Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]
SAHH_RALEH3.030e-2055.17Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_CUPTR3.030e-2055.17Adenosylhomocysteinase OS=Cupriavidus taiwanensis ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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