CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROM2 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ahcY PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L+ YP      IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +    +Y K+VYVLPK
Sbjct:  348 IDVASLKNYPWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNKSE--QYAKEVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CHLCH (Adenosylhomocysteinase OS=Chlorobium chlorochromatii (strain CaD3) GN=ahcY PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    2 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 247
            L   P VK I IKPQ D+++FP  N  + +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW++    +Y   VY LPK
Sbjct:  351 LNNDPTVKIINIKPQVDKYIFPNGNC-MYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWQK----EYAVDVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_FLAPJ (Adenosylhomocysteinase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L    G  +I IKPQ D++        I++LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW  K++  Y   VY+LPK
Sbjct:  312 IDMAWLNKNHGASKIEIKPQVDKYTI--AGKDILILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--KNSAAYNNDVYMLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DESDG (Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE       + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQV+AQLEL    S    E+KVY+LPK
Sbjct:  353 IDMAYLEDSTECSCLNIKPQVDKWTLKSGRS-IIVLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQLEL---ASNPDLERKVYILPK 435          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CHLL2 (Adenosylhomocysteinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L ++ G  ++ IKPQ D++ F   NS I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW    T +Y   VY LPK
Sbjct:  346 IQVEQLNSFAGATKLNIKPQVDKYTFESGNS-IYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW----TKEYSIDVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROVI (Adenosylhomocysteinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L  Y G  ++ IKPQ D++ F E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELWK      YE  VY LPK
Sbjct:  346 IQVEPLNEYKGATKLNIKPQVDKYTF-EDGHCIYMLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWK----NDYEIGVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_GRAFK (Adenosylhomocysteinase OS=Gramella forsetii (strain KT0803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -1
Query:    2 GVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 232
            G  ++ IKPQ D++        II+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW  K+T +Y+ +VY+LPK
Sbjct:  322 GDSKVEIKPQVDKYTI--NGKDIILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--KNTDEYKNEVYMLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DESAD (Adenosylhomocysteinase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = -1
Query:    2 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 247
            LE     K+I IKPQ D+WV  E+   +IVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ++L K     +YE KV +L K
Sbjct:  352 LENSKTAKKIEIKPQVDKWVM-ESGKSVIVLAEGRLVNLGCATGHPSFVMSNSFTNQALAQIDLAK----NEYEPKVMILSK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CHLPD (Adenosylhomocysteinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L  Y G  ++ IKPQ D++ F E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQLELW    T  Y   VY LPK
Sbjct:  346 IQVEPLNNYAGATKLNIKPQVDKYTF-EDGHAIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQLELW----TRDYAIDVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOBA (Adenosylhomocysteinase OS=Rhodopirellula baltica GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = -1
Query:    2 IKPQ----TDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKP      DR+ F +T   II+LA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+EL++ +   KY  +VY+LPK
Sbjct:  330 IKPSDIGAVDRFTFNDTGRSIIILAKGRLVNLGCATGHPSFVMSSSFTNQVLAQMELYQNRDNDKYGVQVYLLPK 404          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_PROM21.964e-1959.77Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_CHLCH1.964e-1959.76Adenosylhomocysteinase OS=Chlorobium chlorochromat... [more]
SAHH_FLAPJ2.565e-1954.02Adenosylhomocysteinase OS=Flavobacterium psychroph... [more]
SAHH_DESDG2.565e-1959.77Adenosylhomocysteinase OS=Desulfovibrio desulfuric... [more]
SAHH_CHLL22.565e-1956.32Adenosylhomocysteinase OS=Chlorobium limicola (str... [more]
SAHH_PROVI3.350e-1957.47Adenosylhomocysteinase OS=Prosthecochloris vibriof... [more]
SAHH_GRAFK3.350e-1959.74Adenosylhomocysteinase OS=Gramella forsetii (strai... [more]
SAHH_DESAD4.376e-1959.76Adenosylhomocysteinase OS=Desulfovibrio salexigens... [more]
SAHH_CHLPD4.376e-1957.47Adenosylhomocysteinase OS=Chlorobium phaeobacteroi... [more]
SAHH_RHOBA5.715e-1960.00Adenosylhomocysteinase OS=Rhodopirellula baltica G... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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