CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RALSO (Adenosylhomocysteinase OS=Ralstonia solanacearum GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKE--KSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW E  K + KY   VY LPK
Sbjct:  346 IDIASVEQYQWEE---IKPQVDHVIFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWTEAQKGSSKYPVGVYTLPK 430          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RALPJ (Adenosylhomocysteinase OS=Ralstonia pickettii (strain 12J) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKE--KSTGKYEKKVYVLPK 262
            +D+  +E Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW E  K + KY   VY LPK
Sbjct:  346 IDIASVEKYQWEE---IKPQVDHVIFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWTEAVKGSNKYPVGVYTLPK 430          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PELPB (Adenosylhomocysteinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L  Y G  R+ IKPQ D++ F E  + I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW    T  Y   VY LPK
Sbjct:  346 IQVEQLYAYAGATRLNIKPQVDKYTF-ENGNCIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW----TKDYAVGVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L  Y G  ++ IKPQ D++ F E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELWK      Y+  VY LPK
Sbjct:  346 IQVEPLNEYKGATKLNIKPQVDKYTF-EDGHCIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWK----NDYKVDVYRLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_FLAJ1 (Adenosylhomocysteinase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L    G  +I IKPQ D++        II+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW   ++  Y+ +VY+LPK
Sbjct:  312 IDMAWLNKNHGASKIEIKPQVDKYNI--NGKDIIILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--NNSAAYKNEVYMLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_COXB1 (Adenosylhomocysteinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L+ Y   + + IKPQ D+ +FP+    ++VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPK
Sbjct:  314 IDIASLQDY---QWMNIKPQVDQVIFPD-GKRLMVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURXL (Adenosylhomocysteinase OS=Burkholderia xenovorans (strain LB400) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ + +  KYE KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTQGN--KYENKVYVLPK 429          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MESSB (Adenosylhomocysteinase OS=Mesorhizobium sp. (strain BNC1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = -1
Query:    2 KRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 226
            K + IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+ELW   S  +YE KVYVLPK
Sbjct:  350 KWVNIKPQVDLIEFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTRGS--QYENKVYVLPK 421          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BURPP (Adenosylhomocysteinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ +    KYE KVYVLPK
Sbjct:  362 IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTQGE--KYENKVYVLPK 429          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHHA_XENLA (Adenosylhomocysteinase A OS=Xenopus laevis GN=ahcy-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            VK++ IKPQ DR++  +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW   +T KY   VY LPK
Sbjct:  317 VKKVNIKPQVDRYLL-KNGRHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW--TNTDKYPVGVYFLPK 389          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_RALSO5.715e-1955.06Adenosylhomocysteinase OS=Ralstonia solanacearum G... [more]
SAHH_RALPJ5.715e-1955.06Adenosylhomocysteinase OS=Ralstonia pickettii (str... [more]
SAHH_PELPB5.715e-1957.47Adenosylhomocysteinase OS=Pelodictyon phaeoclathra... [more]
SAHH_PELLD5.715e-1956.32Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]
SAHH_FLAJ15.715e-1954.02Adenosylhomocysteinase OS=Flavobacterium johnsonia... [more]
SAHH_COXB15.715e-1956.32Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_BURXL5.715e-1966.20Adenosylhomocysteinase OS=Burkholderia xenovorans ... [more]
SAHH_MESSB7.464e-1965.33Adenosylhomocysteinase OS=Mesorhizobium sp. (strai... [more]
SAHH_BURPP7.464e-1966.20Adenosylhomocysteinase OS=Burkholderia phytofirman... [more]
SAHHA_XENLA7.464e-1963.16Adenosylhomocysteinase A OS=Xenopus laevis GN=ahcy... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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