CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PELCD (Adenosylhomocysteinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            +KPQ D+  +P+    I VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW  +++ +YE KVYVLPK
Sbjct:  364 VKPQVDQIEWPD-GKRITVLAKGRLVNLGCATGHPSFVMSNSFTNQVLAQIELW--QNSDRYENKVYVLPK 431          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSJ (Adenosylhomocysteinase OS=Mycobacterium sp. (strain JLS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE   G  RI IKPQ D W F + +S I+VL+EGRL+NLG ATGHPSFVMS SF+NQVIAQ+ELW +    +Y+  VY L K
Sbjct:  363 IDMAALER-SGATRINIKPQVDEWTFDDGHS-IVVLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQIELWTKND--EYDNAVYRLAK 445          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DESVV (Adenosylhomocysteinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE   G   + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL    +    E+KVY LPK
Sbjct:  353 IDMHYLENTEGCVCLNIKPQVDKWTLRSGRS-IIVLAEGRLVNLGCATGHPSFVMSASFTNQTLAQIEL---ATNPDLERKVYTLPK 435          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DESVH (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE   G   + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL    +    E+KVY LPK
Sbjct:  353 IDMHYLENTEGCVCLNIKPQVDKWTLRSGRS-IIVLAEGRLVNLGCATGHPSFVMSASFTNQTLAQIEL---ATNPDLERKVYTLPK 435          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_COXBU (Adenosylhomocysteinase OS=Coxiella burnetii GN=ahcY PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L+ Y   + + IKPQ D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPK
Sbjct:  314 IDIASLQDY---QWMNIKPQVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_COXBN (Adenosylhomocysteinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ahcY PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L+ Y   + + IKPQ D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPK
Sbjct:  314 IDIASLQDY---QWMNIKPQVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_COXB2 (Adenosylhomocysteinase OS=Coxiella burnetii (strain CbuG_Q212) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L+ Y   + + IKPQ D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPK
Sbjct:  314 IDIASLQDY---QWMNIKPQVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPK 394          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CAEEL (Adenosylhomocysteinase OS=Caenorhabditis elegans GN=ahcy-1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKST-GKYEKKVYVLPK 262
            +DV  L T    K+ TIKPQ DR+   +    +I+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW +  T  +Y+  +YVLPK
Sbjct:  308 IDVKWLNTN-ATKKDTIKPQVDRYTL-KNGRHVILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQVELWTKFGTPQEYKLGLYVLPK 393          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_ZYMMO (Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = -1
Query:    2 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 247
            + +   +K   IKPQ D   FP+    IIVLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+   +T KY+K VY+LPK
Sbjct:  342 INSLANMKWTEIKPQVDLVKFPDGKE-IIVLAKGRLVNLGCATGHPSFVMSASFTNQVLAQIELF--CNTDKYQKDVYMLPK 420          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS9 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9902) GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L+ Y   K   IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +    +Y K+VYVLPK
Sbjct:  352 IDVASLKDY---KWDNIKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTK--ANEYGKEVYVLPK 432          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_PELCD9.748e-1964.79Adenosylhomocysteinase OS=Pelobacter carbinolicus ... [more]
SAHH_MYCSJ9.748e-1957.47Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_DESVV9.748e-1957.47Adenosylhomocysteinase OS=Desulfovibrio vulgaris s... [more]
SAHH_DESVH9.748e-1957.47Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]
SAHH_COXBU9.748e-1956.32Adenosylhomocysteinase OS=Coxiella burnetii GN=ahc... [more]
SAHH_COXBN9.748e-1956.32Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_COXB29.748e-1956.32Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_CAEEL9.748e-1957.95Adenosylhomocysteinase OS=Caenorhabditis elegans G... [more]
SAHH_ZYMMO1.273e-1859.76Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahc... [more]
SAHH_SYNS91.273e-1859.77Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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