CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS3 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L++Y   +   IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + S  +Y K+VYVLPK
Sbjct:  352 IDVASLKSY---EWDNIKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTKGS--EYGKEVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPS (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain BisB5) GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK
Sbjct:  358 IKPQVDEITFPD-GKRMILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELFANNKDGKYKKEVYVLPK 427          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROMA (Adenosylhomocysteinase OS=Prochlorococcus marinus GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L++Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+K+  +  Y+  VYVLPK
Sbjct:  352 IDVASLKSYQWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFKKGDS--YQNNVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROM0 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ahcY PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.663e-18
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L+ Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +    +Y K+VYVLPK
Sbjct:  348 IDVASLKNYQWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNKSE--QYAKEVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHHB_XENLA (Adenosylhomocysteinase B OS=Xenopus laevis GN=ahcy-B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.663e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = -1
Query:    2 KRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 226
            K+I IKPQ DR++  +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW   +T KY   VY LPK
Sbjct:  318 KKINIKPQVDRYLL-KNGRHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW--TNTDKYPVGVYFLPK 389          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PROMM (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  L+ YP      IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +    +Y  +VYVLPK
Sbjct:  352 IDVASLKDYPWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFSKGD--QYADQVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSS (Adenosylhomocysteinase OS=Mycobacterium sp. (strain MCS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE   G  RI IKPQ D W F + +S I++L+EGRL+NLG ATGHPSFVMS SF+NQVIAQ+ELW +    +Y+  VY L K
Sbjct:  363 IDMAALER-SGATRINIKPQVDEWTFDDGHS-IVLLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQIELWTKND--EYDNAVYRLAK 445          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSK (Adenosylhomocysteinase OS=Mycobacterium sp. (strain KMS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  LE   G  RI IKPQ D W F + +S I++L+EGRL+NLG ATGHPSFVMS SF+NQVIAQ+ELW +    +Y+  VY L K
Sbjct:  363 IDMAALER-SGATRINIKPQVDEWTFDDGHS-IVLLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQIELWTKND--EYDNAVYRLAK 445          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BRAJA (Adenosylhomocysteinase OS=Bradyrhizobium japonicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.172e-18
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   IKPQ D   FP+ +  II+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK
Sbjct:  355 LKWTNIKPQVDEIEFPDKHR-IIMLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFANNKDGKYKKEVYVLPK 429          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BRASB (Adenosylhomocysteinase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ahcY PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK
Sbjct:  355 LKWTNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELYANNKDGKYKKEVYVLPK 429          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_SYNS31.273e-1859.77Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_RHOPS1.273e-1863.38Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_PROMA1.273e-1858.62Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PROM01.663e-1858.62Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHHB_XENLA1.663e-1864.00Adenosylhomocysteinase B OS=Xenopus laevis GN=ahcy... [more]
SAHH_PROMM2.172e-1858.62Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_MYCSS2.172e-1856.32Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_MYCSK2.172e-1856.32Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_BRAJA2.172e-1860.53Adenosylhomocysteinase OS=Bradyrhizobium japonicum... [more]
SAHH_BRASB2.836e-1859.21Adenosylhomocysteinase OS=Bradyrhizobium sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
back to top