CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 6.317e-53
Identity = 98/150 (65.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIG 450
            N+LNEAAI   RR K AI+  E++D+IDR+VAGMEGT + D KSK L+AYHEVGHA+ GTL PGHDPV+KVTL+PRGQA+GLTWF P +D +L+++ Q+ ARI G LGGR AEEVIFG  EVTTGA  D+++IT LA+QMVT  GMS +G
Sbjct:  422 NVLNEAAIFTARRRKEAITMAEVNDAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDPVEKVTLIPRGQAQGLTWFTPDEDQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMSSLG 571          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.078e-52
Identity = 101/159 (63.52%), Postives = 123/159 (77.36%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQ 477
            NLLNEAAILA RRG   I+ KEIDD+IDR++AGMEGT + DGK K L+AYHE GHA+  TL P H PVQKVTL+PR QA+GLTWF+  ++  L+SK QL + I+  LGGRAAEE +FG  EVTTGA+ DLQQ+T LA+QMVT FGMS +GP  L  G++
Sbjct:  365 NLLNEAAILAVRRGLKQITWKEIDDAIDRVIAGMEGTPIMDGKIKRLIAYHETGHALTATLLPNHPPVQKVTLIPRRQAKGLTWFMQDNERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMSSLGPLCLETGNE 523          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.935e-50
Identity = 98/165 (59.39%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM 495
            NLLNEAAILA R  K++I+  E++++ DRI+ G+ G  M D K+K L+AYHEVGHAI G++   HD V+K+TL PRG A+GLTWF P +D +L+S+  L ARI+  LGGRAAE+VIFG PEVTTGA+ DLQQ+T LA+QMVT FGMS IGP +L D S +G V +
Sbjct:  397 NLLNEAAILATRYKKSSITKNEVNEAADRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLTWFTPEEDQSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMSNIGPLALEDES-TGQVFL 560          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.558e-42
Identity = 94/171 (54.97%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDD---PTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NLLNEAAILA RR    IS  E++D+IDR++AG E    VM++ K K+LVAYHE GHA+ G L P +DPVQK++++PRG+A GLTWF PS+D     L S+  L  ++   LGGR AEE+IFG  EVTTGA+ DLQQ+  +A+QMVT FGMS+ +GP +L  G Q G V +
Sbjct:  372 NLLNEAAILAARRNLTEISMDEVNDAIDRVLAGPEKKNRVMSE-KRKTLVAYHEAGHALVGALMPDYDPVQKISIIPRGRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVAL--GRQGGGVFL 539          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.948e-34
Identity = 77/152 (50.66%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++ +A+QMV  FG S+
Sbjct:  461 NLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSK 612          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.850e-34
Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    V++D K K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++ +A+QMV   G S+
Sbjct:  441 NLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKK-LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERLGFSK 592          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.850e-34
Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++ +A+QM+  FG S+
Sbjct:  473 NLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSK 624          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.568e-34
Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    +   + + LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++ +A+QMV  FG S+
Sbjct:  443 NLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSK 594          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T LA+ MVT +G SE +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T LA+ MVT +G SE +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH2_SYNY36.317e-5365.33Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH_CYAME1.078e-5263.52Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH_ODOSI2.935e-5059.39Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH4_SYNY38.558e-4254.97Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH5_ARATH2.948e-3450.66Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_CAPAN3.850e-3451.63Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH3.850e-3450.00Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ORYSJ6.568e-3450.00Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_SHIFL3.260e-3345.83Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI3.260e-3345.83Cell division protease ftsH OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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