CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T LA+ MVT +G SE +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.257e-33
Identity = 78/153 (50.98%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    V++D K K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LG R AEEVIFG   VTTGA+ D  Q++ +A+QMV   G S+
Sbjct:  464 NLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSDEKKK-LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSK 615          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.257e-33
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T LA+ MVT +G SE +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.257e-33
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T LA+ MVT +G SE +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.484e-33
Identity = 78/167 (46.71%), Postives = 110/167 (65.87%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NLLNEAA++A R+ K  I +++ID++ DR++AG  + + +   K +++VAYHE GH + G +    D V KVT+VPRGQA G    +P +D    +K +L  +IVG LGGR AEE+IFG  EV+TGA  D Q+ T +A++MVT FGMSE +GP      SQ G V +
Sbjct:  372 NLLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFG--EVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQ-FGQSQGGQVFL 535          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.484e-33
Identity = 73/153 (47.71%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGP 453
            NLLNEAA+LA R+GK  I+ +EI++++DRI  G+E   MT   K K  +A HE GHA+ G ++   D V K++++PRG A G+T  +P +D  +  K+ L+ +I+  LGGRAAEEV FG   +TTGA  DLQ+ T LA +MV+ +GMS+ +GP
Sbjct:  367 NLLNEAALLAARKGKEEITMEEIEEALDRITMGLERKGMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGP 519          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.113e-32
Identity = 77/164 (46.95%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEI-GPWSLMDGSQS 480
            NL+NEAA+LA R  + +++  +  ++I+R+VAG+E    V++D K K +VAYHEVGHA+ G + PG   V K+++VPRG A  G T  +P++D  L+++ +L  +I   LGGRAAEE++F    +TTGAA DLQ+ T LA+QMVTT+GMS++ GP +   G Q+
Sbjct:  387 NLVNEAALLAARNKQDSVTEADFREAIERVVAGLEKKSRVLSD-KEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVF--DSITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQN 547          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.759e-32
Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+NEAAILA RR    IS  EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEV FG   VTTGA+ D  Q++ +A+QMV  FG S+
Sbjct:  464 NLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEV-FGQDNVTTGASNDFMQVSRVARQMVERFGFSK 614          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.604e-32
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  K  +S  E + + D+++ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+TGA  D++  T LAK MVT +G SE +GP  L+   + G++ +
Sbjct:  363 NLVNEAALFAARLDKRVVSMLEFERAKDKMMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGRALGVTFFLPESDTLSISRQKLESQISTLYGGRLAEEIIYGAKNVSTGAYNDIKIATSLAKNMVTQWGFSEKLGP--LLYAEEEGEIFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.789e-31
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGS 474
            NLLNEAA++A R     IS   I+++IDR++AG  + + +   K K +VA+HE GH + G      D V KVT+VPRG A G    +P +D   +++ +L  +I+G LGGR AEEV FG  EV+TGA  D Q+ TG+A++MVT +GMSE +GP   + GS
Sbjct:  377 NLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPAKKSRVISPKEKKIVAWHEAGHTVVGVKLENADMVHKVTIVPRGMAGGYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFG--EVSTGAHNDFQRATGIARKMVTEYGMSEKLGPMQFISGS 534          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_ECO573.260e-3345.83Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_TOBAC4.257e-3350.98Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_SALTY4.257e-3345.83Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI4.257e-3345.83Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_BACSU9.484e-3346.71Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_AQUAE9.484e-3347.71Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH3_SYNY32.113e-3246.95Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_MEDSA2.759e-3250.00Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_BUCAI3.604e-3244.64Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BACPF1.789e-3145.63Cell division protease ftsH homolog OS=Bacillus ps... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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