CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.417e-28
Identity = 63/150 (42.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N++NEAA+LA R G+A +   ++D+++++ + G++  + +   + + ++AYHE GHA+ GT T G D V K+T++PRG  A G T+ IP DD  ++++QQL A +   L GRAAE V FG  EV+TGA  D+ + T + ++M+T +GMSE
Sbjct:  351 NVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFG--EVSTGAGNDISRATDIVRKMITDYGMSE 498          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.851e-28
Identity = 64/153 (41.83%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGP 453
            N++NEA++L+ R     I S +ID++IDR++AG   +  V++  + K+ VAYHE GHA+ G    G + VQK+T++PRG A G     P ++    SK++L A I   +GGRAAE +I+G   ++TGA+ D+ + T +A++MVT +GMS +GP
Sbjct:  423 NVINEASLLSVREKTDVIISTQIDEAIDRVMAGPAKKSRVISQEELKA-VAYHEAGHAVVGLKVKGGNKVQKITIIPRGNAGGYNLMTPEEEKYNASKKELLATIASYMGGRAAEMIIYGKENISTGASDDISRATKIARKMVTEWGMSALGP 574          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.417e-28
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIG 450
            NL+N AA+ A   G   ++  +++ + DRI+ G E    V++D +S+ L A+HE GHA+    T G  PV K T+VPRG A G+   +P  D T IS++Q+ AR+   +GGR AEE+IFG  EVT+GA+ DL+Q T LA+ MVT FGMS E+G
Sbjct:  435 NLVNVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAVISD-ESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRGMALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVG 586          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.033e-28
Identity = 64/166 (38.55%), Postives = 106/166 (63.86%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDV 489
            NL+NEA ++A RR K  +   +++++ D+++ G+E    +M+D + K L AYHE GHA+ G      DP+ K T++PRG+A G+   +P +D   + + ++ A I   + GR AEE+IFG  +VT+GA+ D++  T +AK MVT +G+S+ +GP  +  GS S D+
Sbjct:  366 NLVNEATLIAARRNKKEVEMHDLEEAKDKVMMGVERRSMIMSD-EQKKLTAYHEGGHALVGLYCLASDPIHKATIIPRGRALGMVMRLPENDRFSMPRDKMEADIAVAMAGRVAEEIIFGKEKVTSGASSDIKMATRMAKAMVTDWGLSDKVGP--VYHGSASEDM 528          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.186e-28
Identity = 65/171 (38.01%), Postives = 104/171 (60.82%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMA 507
            NL+NEAA++A R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GAA D++  T +A+ MVT  G+S+ IGP  +  GS S D+  R  +
Sbjct:  366 NLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGKNKVTSGAASDIKGATNIARAMVTKAGLSDLIGP--IFHGSSSDDMYGRQQS 534          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.673e-27
Identity = 64/168 (38.10%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMR 498
            NL+NEAA++A R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T +A+ MVT  G+S+ IGP  +  GS S D+  R
Sbjct:  366 NLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGP--IFHGSNSDDMYGR 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+N+AA+ A   GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE
Sbjct:  490 NLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 638          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+N+AA+ A   GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE
Sbjct:  548 NLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 696          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.559e-27
Identity = 64/168 (38.10%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMR 498
            NL+NEAA++A R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T +A+ MVT  G+S+ IGP  +  GS S D+  R
Sbjct:  366 NLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPLHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGP--IFHGSSSDDMYGR 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+N+AA+ A   GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D     + QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE
Sbjct:  490 NLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 638          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_TREPA1.417e-2842.00Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_MYCPU1.851e-2841.83Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH4_ARATH2.417e-2846.41Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_RICBR7.033e-2838.55Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICTY9.186e-2838.01Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR2.673e-2738.10Cell division protease ftsH homolog OS=Rickettsia ... [more]
YMEL1_MOUSE3.491e-2743.62ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN3.491e-2743.62ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSH_RICFE4.559e-2738.10Cell division protease ftsH homolog OS=Rickettsia ... [more]
YMEL1_RAT7.776e-2743.62ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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