CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMR 498
            NL+NEAA++A R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T +A+ MVT  G+S+ IGP  +  GS   D+  R
Sbjct:  366 NLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGP--IFHGSSGDDMYGR 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 64/150 (42.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+N AA+ A   G  A++  +++ + DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG+  G+   +P  D T  S++Q+ A +   + GR AEE+IFG  EVT+GA+ D Q  T +A+ MVT +GMS+
Sbjct:  431 NLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSK 579          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.041e-26
Identity = 73/168 (43.45%), Postives = 96/168 (57.14%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVM--TDGKSKS--------------LVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGP 453
            NL+N AAI A   G   +++ +++ + DRI+ G E   M  +D   K+              L AYHE GHAI    T G  P+ K T++PRG A G+   +PS D T ISK+QL AR+   +GGR AEE+IFG   VTTGA  DL   T LA+ MV+  GMS+ IGP
Sbjct:  535 NLVNIAAIKAAVEGADKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSDAIGP 702          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.583e-26
Identity = 61/165 (36.97%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGD 486
            N++NEAA+L  R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD
Sbjct:  374 NVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGD 533          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.583e-26
Identity = 61/165 (36.97%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGD 486
            N++NEAA+L  R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD
Sbjct:  374 NVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGD 533          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.583e-26
Identity = 61/165 (36.97%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGD 486
            N++NEAA+L  R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD
Sbjct:  374 NVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGD 533          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSM 519
            NL+N+AA+ A ++   ++     + + D+I+ G E    V+TD   K+  A+HE GHAI    T G  P+ K T++PRG+A G+T+ +P  D   I+K++  AR+   +GG+ AEE+I+G    T+G   DLQ  TG A+ MVT +GMS ++GP +L +  +S    +R +A N +
Sbjct:  489 NLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTDAARKA-TAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLSENWESWSNKIRDIADNEV 663          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.267e-25
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMD 468
            NL+N+AAI A  R    +    + D+ DR++ G       D ++  + A+HE GHA+   LT    P+ KVT++PRG+A GLT F+   D + +++ QL A++   +GGR  EE++FG  +VT GAA D ++ T LA+ MV  FG  S+IGP  + D
Sbjct:  375 NLVNQAAIAAALRNDPFVEMHHLWDARDRLIMGPAKRRPLDDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.267e-25
Identity = 60/165 (36.36%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGD 486
            N++NEAA+L  R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D+++ T +A+ MVT FGM S++G  ++  GS+ GD
Sbjct:  374 NVVNEAALLTARENGLVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEKATKIARSMVTEFGMSSKLG--AVRYGSEHGD 533          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.267e-25
Identity = 62/166 (37.35%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM 495
            N+ NEAA++A R    AI+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++
Sbjct:  522 NVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL 684          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_RICCN7.776e-2737.50Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH4_ORYSJ2.955e-2642.67Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH9_ORYSJ5.041e-2643.45Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH_MYCTU6.583e-2636.97Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA6.583e-2636.97Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO6.583e-2636.97Cell division protease ftsH homolog OS=Mycobacteri... [more]
YME1_YEAST8.598e-2637.50Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
YME1_SCHMA3.267e-2539.49Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
FTSH_MYCLE3.267e-2536.36Cell division protease ftsH homolog OS=Mycobacteri... [more]
AFG32_MOUSE3.267e-2537.35AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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