CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 62/151 (41.06%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEI 447
            N++NEAA+LAGR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAEEV     E++TGA+ DL++ T + K MV+ +GMS +
Sbjct:  383 NIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFL--EEISTGASNDLERATDIIKGMVSYYGMSSV 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPW 456
            N+ NEAA++A R  + A+     + +I+R++ G+E  + +   + K +VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P  D  L+++QQL  R+   LGGR +EE+ F  P VT+GA+ D +++T +A  MVT  GMS+   W
Sbjct:  562 NVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGW 712          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25
Identity = 61/151 (40.40%), Postives = 96/151 (63.58%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEI 447
            N++NEAA+LAGR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T + K MV+ +GMS++
Sbjct:  389 NIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--QEISTGASNDLERATDIIKGMVSYYGMSDV 537          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25
Identity = 61/166 (36.75%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM 495
            N+ NEAA++A R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++
Sbjct:  523 NVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL 685          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.506e-25
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N++N+AA+ A       ++   +D++ DR++ G    G  + D ++    AYHE GH +    T    P+ KVT++PRGQ+ G T  +P  D   ++K Q+ A +   +GGR AEE+IFG  +VTTGAA DL + T LA QMV  FGMS+
Sbjct:  410 NMVNQAALKAATDNAVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSD 559          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.621e-24
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEI 447
            N++NEAA+LAGR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T + K MV+ +GMS +
Sbjct:  383 NIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSV 531          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.118e-24
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS 441
            N  NEAA++A R     I+    + +I+R++AG+E  T +   + K  VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P D   LIS++Q   R++  LGGR +EE+ F  P VT+GA  D +++T +A  MVT+ GMS
Sbjct:  507 NACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMS 652          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.118e-24
Identity = 60/166 (36.14%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM 495
            N+ NEAA++A R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++
Sbjct:  524 NVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL 686          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.612e-24
Identity = 57/149 (38.26%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+ NEAA++A R    ++  +  + +I+R++ G+E  T +     K+ VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QLF R+   LGGR AE++ FG  ++TTGA  DL+++T  A   +  FGMSE
Sbjct:  515 NVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFG--QITTGAQDDLRKVTQSAYAQIVQFGMSE 660          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.718e-24
Identity = 68/169 (40.24%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSG 483
            NL+NEAA+LAGR+ K  +   +   +++R +AG+E  T    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P+ +D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T +A + V  +G++E IGP S+   S  G
Sbjct:  543 NLVNEAALLAGRKSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG-RISTGALDDIRRATDMAYKAVAEYGLNEKIGPVSVATLSAGG 710          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_HELPJ4.267e-2541.06Cell division protease ftsH homolog OS=Helicobacte... [more]
RCA1_YEAST5.573e-2540.26Mitochondrial respiratory chain complexes assembly... [more]
FTSH_HELFE7.279e-2540.40Cell division protease ftsH homolog OS=Helicobacte... [more]
AFG32_HUMAN7.279e-2536.75AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YME1_CAEEL9.506e-2540.00Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_HELPY1.621e-2440.40Cell division protease ftsH homolog OS=Helicobacte... [more]
AFG3_YEAST2.118e-2442.28Mitochondrial respiratory chain complexes assembly... [more]
AFG32_BOVIN2.118e-2436.14AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
AFG31_MOUSE3.612e-2438.26AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH9_ARATH4.718e-2440.24Cell division protease ftsH homolog 9, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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