CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.793e-23
Identity = 59/156 (37.82%), Postives = 97/156 (62.18%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSL 462
            NL+N+AA+ A +    A+S ++++ S DRI+ G E  +     ++K + AYHE GHA+    T       K T++PRG + G+T  +P  D    ++++  A +   +GGRAAEE+++G  ++T+GA  D+ + T +A++MVT FGMS+ IGP SL
Sbjct:  479 NLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL 634          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 67/169 (39.64%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSG 483
            NL+NEAA+LAGR+ K  +   +   +++R +AG+E  +    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P S+D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T +A + V  +G+++ IGP S+   S  G
Sbjct:  539 NLVNEAALLAGRKNKTNVEKIDFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSG-RISTGAFDDIRRATDMAYKAVAEYGLNQKIGPVSVATLSGGG 706          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSG 483
            NL+NEAA+LAGR  K  +   +   +++R +AG+E       G  K++VA HEVGHA+ GT    L PG   V+K++++PR G A G T+  P ++D  L+   +L  R+V  LGGRAAEEV+  G  V+TGA  D+++ T +A + V  +G+++ IGP S+   S  G
Sbjct:  560 NLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSG-RVSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGG 727          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/150 (40.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+ NEAA++A R     I+ +  + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+D+  L++K+QLF      LGGRAAEEV+ G  +++TGA  DL+++T +    V  +G SE
Sbjct:  534 NVCNEAALIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--KISTGAQNDLEKVTKMTYAQVAVYGFSE 680          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 60/150 (40.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+ NEAA++A R  +  I+ +  + +IDRI+ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAEEV+ G   ++TGA  DL+++T +    V  +G SE
Sbjct:  549 NVCNEAALIAARSEETQITMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--RISTGAQNDLEKVTKMTYAQVAVYGFSE 695          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 53/148 (35.81%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS 441
            N+ NE A++A R     +     + +I+R+ AG+E  + +   + K+ VA+HE GHA+ G      DP+ KV+++PR QA G   ++P D   L+S+ Q+  ++   L GR +EE+ FG  ++T+GA+ D Q++T +A+  VT +GMS
Sbjct:  510 NVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ-YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMS 656          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 56/149 (37.58%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+LNEAA++A R+ K  I++ +ID+ +DR +AG  +   +   + + +VAYHE GHAI G +      V+KVT+VPRG+  G    +P ++    +   L  ++   +GGR  EE++FG    T GA+ D+++ T +A+ MVT +GMS+
Sbjct:  405 NVLNEAALVAARQNKKEINAADIDEGMDRAMAGPAKKDRIQSMREREIVAYHEAGHAIVGLVLENGSTVRKVTVVPRGRIGGYMLALPDEEIMQPTNFHLQDQLASLMGGRLGEEIVFG--VATPGASNDIEKATHIARSMVTEYGMSK 551          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 58/150 (38.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+ NEAA++A R   A ++    D +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G   ++TGA  DL+++T +    V  +G S+
Sbjct:  541 NVCNEAALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--RISTGAQNDLEKVTKMTYAQVAVYGFSD 687          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.767e-22
Identity = 57/150 (38.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            N+ NEAA++A R   A ++    + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G  +++TGA  DL+++T +    V  +G S+
Sbjct:  535 NVCNEAALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--KISTGAQNDLEKVTKMTYAQVAVYGFSD 681          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.420e-20
Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQ 477
            N+ NEAA+ A R G  ++ +   + +++R++AG  + + +   + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T +A  MV  FGM+  IGP S  +  +
Sbjct:  523 NICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQE 681          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
YME1_SCHPO1.793e-2337.82Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH7_ARATH2.341e-2339.64Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ORYSJ3.994e-2340.83Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH3_ORYSJ6.812e-2340.00Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH8_ORYSJ8.897e-2340.00Cell division protease ftsH homolog 8, mitochondri... [more]
RCA1_SCHPO1.982e-2235.81Mitochondrial respiratory chain complexes assembly... [more]
FTSH_LACLA1.982e-2237.58Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSHA_ARATH1.982e-2238.67Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH5.767e-2238.00Cell division protease ftsH homolog 3, mitochondri... [more]
SPG7_MOUSE1.420e-2037.04Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
back to top