CX288532

Overview
NameCX288532
Unique NameCX288532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig483 contig Ccv1_Contig483:35..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.058e-31
Identity = 71/188 (37.77%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L +M+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  312 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGKMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 489          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.183e-30
Identity = 72/182 (39.56%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G I K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L +M+   + K         P      V S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEIINIGNPDNEASIEELGKMLLASFDKHPLRQHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D +EA+  +I+N     NG I N+GNP NE ++RQL E +   +    +           DV SK FYG GY D + R P +
Sbjct:  449 EDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRSNFPPFAGFRDVESKAFYGAGYQDVEHRKPSI 625          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 74/181 (40.88%), Postives = 105/181 (58.01%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +IEN     NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +
Sbjct:  449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSI 625          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.635e-30
Identity = 77/194 (39.69%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   14 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSI 624          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.635e-30
Identity = 77/194 (39.69%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   14 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSI 624          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.635e-30
Identity = 77/194 (39.69%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   14 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSI 624          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 71/182 (39.01%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 71/182 (39.01%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 71/182 (39.01%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSI 623          
The following BLAST results are available for this feature:
BLAST of CX288532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SHIB39.058e-3137.77Putative bifunctional polymyxin resistance protein... [more]
ARNA_ESCF31.183e-3039.56Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF1.545e-3041.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE141.545e-3040.88Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE2.635e-3039.69Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAB2.635e-3039.69Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA82.635e-3039.69Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTY3.442e-3039.01Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI3.442e-3039.01Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALSV3.442e-3039.01Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02001E03SK IF1 Citrus clementina cDNA clone C02001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288532 ID=CX288532; Name=CX288532; organism=Citrus clementina; type=EST; length=592bp
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGAGGATGG
ACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGGGTTCTG
GCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCTTGTCGA
CGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTATTGAAG
CTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCATATTTTC
AATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGCTGAGAT
GATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGGAGGAGC
CAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATATGATGAT
AGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAG
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