CX288660 | Citrus Genome Database

Overview


Name	CX288660
Unique Name	CX288660
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	447

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig141	contig	Ccv1_Contig141:1..447.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

The following BLAST results are available for this feature:

BLAST of CX288660 vs. ExPASy Swiss-Prot

BLAST of CX288660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_LUPAL	1.389e-35	98.68	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	1.389e-35	98.68	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	1.389e-35	98.68	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	1.389e-35	98.68	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	1.389e-35	98.68	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	1.389e-35	98.68	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	1.389e-35	98.68	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	1.389e-35	98.68	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	1.389e-35	98.68	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	1.389e-35	98.68	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02002H09SK IF1 Citrus clementina cDNA clone C02002H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288660 ID=CX288660; Name=CX288660; organism=Citrus clementina; type=EST; length=447bp
GAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCATGCAGATCTT
TGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG
ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCA
CCAGATCAGCANAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAG
GACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCTTCACTTGGTTC
TTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACACTCACTGGGAAA
ACCATCACATTGGAGGTTGAGAGTTCGGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTGATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAAC