CX288660

Overview
NameCX288660
Unique NameCX288660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig141 contig Ccv1_Contig141:1..447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.176e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.472 bits (293), Expect = 2.625e-26
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.535e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.087 bits (292), Expect = 3.428e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.535e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.087 bits (292), Expect = 3.428e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.005e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 116.701 bits (291), Expect = 4.478e-26
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.005e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 116.701 bits (291), Expect = 4.478e-26
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.619e-34
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.619e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.420e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.420e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.420e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
The following BLAST results are available for this feature:
BLAST of CX288660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBIQ_ACECL1.176e-3494.74Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR1.535e-3496.05Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA1.535e-3496.05Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.005e-3494.74Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.005e-3494.74Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU2.619e-3494.74Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE2.619e-3494.74Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA3.420e-3494.74Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR3.420e-3494.74Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT3.420e-3494.74Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02002H09SK IF1 Citrus clementina cDNA clone C02002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288660 ID=CX288660; Name=CX288660; organism=Citrus clementina; type=EST; length=447bp
GAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCATGCAGATCTT
TGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG
ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCA
CCAGATCAGCANAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAG
GACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCTTCACTTGGTTC
TTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACACTCACTGGGAAA
ACCATCACATTGGAGGTTGAGAGTTCGGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTGATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAAC
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